Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 275 7e-69 >seq2 Length=1775135 Score = 275 bits (304), Expect = 7e-69 Identities = 572/838 (68%), Gaps = 29/838 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||||||| ||| |||||| |||| || ||||| || ||||||| Sbjct 183206 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTG 183265 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||||| ||||| || ||||||||| || || | | | | || || Sbjct 183266 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACC 183325 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| ||||||||||| ||||||| | |||| ||| | Sbjct 183326 TAAACATTC--TAATAATCG-ATCAGCAACAAATTCGATGTATTGAGACATAAGTCTTGA 183382 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||||| | || | | || || |||| | |||||| | || Sbjct 183383 ATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAAC 183442 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAA 37168 || |||||||||||||| || ||| ||||| | | || || ||| | || | Sbjct 183443 TGCTTCTTTAACTATATTCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATA 183502 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | |||||| |||||| ||||| |||||||| ||||| || ||||||||| ||| Sbjct 183503 AATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAA 183562 Query 37229 GGTTAATCC-TGGCATTAAACCTCtt--tttttAATCCAAAATATTGCTGCAAAAGAT-C 37284 ||||| || || ||| | | || ||||||| |||||||||||| |||||| | | Sbjct 183563 TGTTAAACCGTGTAATTTA---TTTTGCTTTTTAAACCAAAATATTGCA-CAAAAGCTTC 183618 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 || ||| || || ||||| || |||| ||||||| | | | | |||| || Sbjct 183619 CACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG---AAT 183675 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | |||| |||||||| || ||| ||| || ||| | | || ||| Sbjct 183676 TTGTATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 183735 Query 37405 CAATTGCTTTTAAGAGAAAGttt---ttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 |||| || | || | || || | | |||| | ||| | |||||| ||||||||| Sbjct 183736 CAATAGCATGAAATA--AATTTAACCTCTCCTTCTC-ATCCTTAATATAATTATCAATTA 183792 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 ||||||||| |||||||||| |||||||||| |||||| |||||| |||||| Sbjct 183793 ATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTT 183852 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 |||||||| || ||| || || | ||||| | |||| || ||||| ||||| | Sbjct 183853 TAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTC 183912 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTG 37638 |||||||||||||||| || || | |||| ||||||||||||| |||||| |||| Sbjct 183913 CATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT-- 183970 Query 37639 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| | || || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 183971 -TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 184027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316311338640