Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq11 120 7e-22 >seq11 Length=775211 Score = 120 bits (132), Expect = 7e-22 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 133942 TGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCA 134001 |||||||||||| || ||||||||||| | || || || |||||| || |||| Sbjct 160672 TGCATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCA 160613 Query 134002 ATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATT 134061 ||| | || ||| || || |||||||||||| | |||||||| |||||| || Sbjct 160612 ATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATCAACGATCTTGTGATTTAGG 160553 Query 134062 CTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGT 134121 | || || ||||| || |||||||| ||||| || | || ||||| |||||||||| Sbjct 160552 GCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 160493 Query 134122 TTGTGGGTTAGAAGTTGGTGAGTTTGT--ATGGATGGGTGGAGATGTTCACATTTATAAA 134179 ||| ||| || | ||| ||| | ||| || | ||| ||| ||| ||||||| Sbjct 160492 ATGTAATTTACAACCAGCTGAATTTATACATGTATTG--GGAAATGCTCATGTTTATAAT 160435 Query 134180 AATCACGTAGAA 134191 ||||| || ||| Sbjct 160434 AATCATGTTGAA 160423 Score = 86.0 bits (94), Expect = 1e-11 Identities = 258/387 (67%), Gaps = 15/387 (4%) Strand=Plus/Minus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATC 150457 ||| | || || || ||||||||||||||| ||| ||||| || || || | || Sbjct 308578 TTATTAGGAGATCCTGGTGTTGGTAAAACAGCAATAGTTGAAGGGTTGGCTATAAAAATT 308519 Query 150458 GCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGG 150515 | | || ||||| || ||||| || ||| | | |||| | ||||||| ||||| Sbjct 308518 GTACAAGGAGATGTACCTGATTC-ATTAAA-AGGAAGAAAGTTAGTTTCTTTAGATATGT 308461 Query 150516 GTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTT 150573 |||| | ||||||| |||| ||| | ||||| || ||||| || || | | |||| Sbjct 308460 CATCATTAATTGCTGGTGCTAAATATAGAGGTGATTTTGAAGAGCGCTTAAAATCTATTT 308401 Query 150574 GCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATAC 150630 || ||||| | | || || | | || || |||| || ||||| || ||||| Sbjct 308400 --TAAAAGAAATTCAGGATTCAGAGGGACAAGTAGTTATGTTTATTGATGAGATACATAC 308343 Query 150631 TATTATGGGTGCTGGTGCGACTGGC-GGCGGTTCTTTGGATATGAGCAATATGTTAAAAC 150689 || | || |||||||| | | || | ||| | || ||| | ||||| ||||||| Sbjct 308342 GGTTGTTGGGGCTGGTGC-AGTAGCAGAAGGTGCATTAGATGCAGGTAATATATTAAAAC 308284 Query 150690 CTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGT 150748 | ||| | || || ||| | | ||| ||||||||||| || ||||||| | Sbjct 308283 CACTACTAGCCCGAGGAGAATTAAGATGT-ATCGGTGCAACTACTGTTAGTGAATATAGA 308225 Query 150749 AAACACATTGAAAAAGATGCAGCACTA 150775 || || ||||||||| |||| || Sbjct 308224 CAATTTATAGAAAAAGATAAAGCATTA 308198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147589429568868