Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq9 125 6e-24 seq3 114 1e-20 >seq9 Length=1049758 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||||||||| || ||||| || || ||| ||||| ||| Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || || ||||| || | || ||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCA 615708 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | ||||| || || |||||||| |||||| | ||| | | || ||||| Sbjct 615707 ACAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAA 615648 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||||||||||||| | ||| | || ||||||||| |||| || || Sbjct 615647 CATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGGTAT 615597 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||||||||| || ||||| || || ||| || || ||| Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || || ||||| || | || ||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCA 615252 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || ||| | || ||||| || ||||||||||||||| | ||| | | |||||||| Sbjct 615251 GCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAA 615192 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||||||||| || | || | || ||||||||| ||||||| Sbjct 615191 CATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGG 615144 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||| || ||||| || || || ||||| || Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || ||||| ||| | || |||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 28731 || ||| | || || || || |||||||||||||| | || ||||| | ||||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTAT--CTGATTATA 615421 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||||| || | || | || |||||| || ||||||| || Sbjct 615420 ACATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGGTAT 615369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || ||||| || | || ||||| || ||| | || ||||| Sbjct 615975 AAGCAAAAATTCAA-GATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCT 615917 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || |||||||| |||||| | ||| | | ||||||||||| ||||||||||| || Sbjct 615916 GGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACC 615857 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || | || ||||||||| ||||||| || Sbjct 615856 TTACATTTAGTTTTAAGATTAAGAGGAGGTAT 615825 >seq3 Length=1741454 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || ||||| || || || ||||| Sbjct 1503874 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1503815 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | || ||||||| || ||||| ||| | ||| ||| Sbjct 1503814 TCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 1503755 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | || || || || |||||||| |||||| | |||| | | || ||| Sbjct 1503754 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTAT 1503695 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||||||||||||||||| || | || ||||| || Sbjct 1503694 AACATTCAAAAAGAATCAACCTTACATTTGGTAATA 1503659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404457815014