Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq9 352 1e-92 >seq9 Length=1049758 Score = 352 bits (390), Expect = 1e-92 Identities = 461/628 (73%), Gaps = 9/628 (1%) Strand=Plus/Plus Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974 ||||| || ||| | | |||||||||||| || | ||| || |||||||||||||| | Sbjct 573547 ATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACG 573606 Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034 ||||||| ||||||||| |||||||| ||| ||| |||||| || |||||||||||||| Sbjct 573607 AGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGA 573666 Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094 |||||||||||| | ||| | ||||||| ||| ||||||||||| |||||||||||||| Sbjct 573667 GTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGCCACCTTGATCTAC 573726 Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154 |||||||| || ||||| |||||| | |||||||||||||| ||| |||| | || || Sbjct 573727 ATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATT 573786 Query 26155 TGTGCTATGAATCT-TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCAC 26213 || | ||| | | || || | ||||||||| || || || ||| || || | Sbjct 573787 AGTTCCTCTAATATAAGAATTTTGAC-CTCTAATATCTTGTACAGCAACACCTATACCTC 573845 Query 26214 CAGCCCATTTTGAAATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTA 26272 | || ||| ||| |||||| | || || ||| || || || |||| ||| | Sbjct 573846 CTGCTGTTTTACTAATTAATGCACATTGCTTTAA-TGTTTCAAATATACCTTCTATCGAA 573904 Query 26273 TCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTA 26332 ||| |||||| ||||||||| || ||||| | ||| | | |||||| |||||| Sbjct 573905 TCAGATTTCATCGATAATAAAAAGCATGAAGACATTTGGGGCCTTGGTGTTCCCGAATTA 573964 Query 26333 AATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA-AAGCTGTATAAGTTTCAAG 26391 |||||||| || |||||||||||| ||||| || | || | || ||||||||| | Sbjct 573965 AATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATG-ATAAGTTTCTAA 574023 Query 26392 AACTTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGG 26451 | | | || | || | | || | | | |||| | ||| | | | || |||||| Sbjct 574024 AGCCTTTTCAAGATCATCAATATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGG 574083 Query 26452 TCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAA 26511 |||||||| | ||||| | || |||| || || ||| | ||||| ||||| || Sbjct 574084 GCGTTCAATAATTTTATTAT--TAATACGTAAT-AAGTAGGATCTCTCTAATGTTTTAAA 574140 Query 26512 TCCAAAATAATCATGATTGAAATCTCTT 26539 |||||||||||||| ||| ||||||||| Sbjct 574141 TCCAAAATAATCATAATTAAAATCTCTT 574168 Score = 168 bits (186), Expect = 3e-37 Identities = 464/698 (66%), Gaps = 30/698 (4%) Strand=Plus/Plus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 |||||||||| |||||||||||||||| ||||| ||||| || ||||||||||| || Sbjct 572718 ATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTG 572777 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || |||| || || | || ||||||| |||||||| Sbjct 572778 CTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCAAT 572837 Query 25179 CTAAA---TTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCC-- 25233 | || ||||||||| ||| | | | || || |||||||||||| | ||| Sbjct 572838 CCCAATATTTATTATCT-ACT---TTTGCATTCCACAT--ATCAAATTGTAATATTCCTT 572891 Query 25234 -ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTT 25292 ||||||| | ||||| | | | |||| || ||| | ||| | || Sbjct 572892 TGCTTGCTGGACTACCTTGAT---ATGATTCATATGGTCCATTTACTTGTGCTAACTCAA 572948 Query 25293 TTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAG 25352 || ||||| ||||||||||||||| | ||||| || | | ||||| |||| Sbjct 572949 CAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCTATTTAATTCTTTAG 573008 Query 25353 CTTTTTCTCCATCGAAAGCAATTTCCATTAAGGC--GAACGTATCTGCTAATCCCTGAAC 25410 ||| || || | | | | | | || || || |||||||||||||| || || Sbjct 573009 CTTCATCAGATTCATATGGA--TATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTAC 573066 Query 25411 TCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAA 25470 ||||| ||||| || | |||| | ||||| | | || | |||| |||| || | Sbjct 573067 TCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATTGGGTAATA 573126 Query 25471 ATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTC 25530 |||| | || || | ||||||| ||| | || | | ||| ||| | || | Sbjct 573127 ATTTCTTTCAATAATTTTATCTAAATT-TCTA-GTAATAATTTTAGTAATATC---ATAT 573181 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 ||| | ||| ||| || ||| | ||||| | ||||||||| |||| || || Sbjct 573182 AATTTTTTAAAATTAA----ATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 573237 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATAC 25649 ||| |||| ||||||||||||| ||| || || | | ||||||| || || || Sbjct 573238 TGAAGCTAGATTACAAACAGCTACTTC-ATCAGGTGATGTATATTCAACAATTTCACAAC 573296 Query 25650 ATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAATAT 25709 |||| || ||| |||| ||| ||| |||| ||||||||| | |||| || Sbjct 573297 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCAT 573356 Query 25710 CTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGA 25747 |||||||| | |||||| || |||||||||||| Sbjct 573357 CTTTATATAACATATATGGTACACCAGTTTCAATTTGA 573394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039796460950