Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 >seq1 Length=2452783 Score = 147 bits (162), Expect = 3e-30 Identities = 479/734 (65%), Gaps = 20/734 (3%) Strand=Plus/Plus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||||| ||| || |||||| | |||||| | || || | |||||||| Sbjct 913696 AATAACAAAATCATTAGGAGTTTTTTGTTGTAACATTAAATATATTGCATATACATAATC 913755 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGC 47913 | | ||||| ||||| || | || || ||||| |||||||| ||||| |||||| ||| Sbjct 913756 TTTTGCATGACCCCAATCTCTAAATGTATCAATATTTCCTA-ATATAATAACAGT-TTGG 913813 Query 47914 TTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCA 47973 | || | | ||| | || || ||||||| || || ||||| ||||||||| Sbjct 913814 ATTTTTTTAAATATTTTTGCTATACCTTTTGTAATTTTCTTTGTAACAAATGTTTCACCA 913873 Query 47974 CGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCA 48033 ||||||||| |||||||||||| | |||||| | | | |||| |||| ||| Sbjct 913874 CGTCTTGGACTTTCATGATTAAATAATATACCATTTACGCAAAACATATTATATGCTTCT 913933 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| | | | ||| | |||||| | |||||||| || |||| Sbjct 913934 CTATAATTTTTTGTTATATAATGACTATATAATTTTGCTATCCCATAAGGTGAGACTGGA 913993 Query 48094 TAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCACT 48149 | || || || | || | || | | ||| | |||||||| | ||| Sbjct 913994 TTAAATGGAGTATTTTCATTTTG-ACATTGGCTTTGAGTATTATTACCATATAATTCCGA 914052 Query 48150 GGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAG 48209 || || || | ||| | | ||| || |||| || | ||| || | Sbjct 914053 TGTTGAAGCATTATAAAATTTTA---TATTATCAATCTTTGATAATTTAATTGCTTCTAA 914109 Query 48210 CACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAACGA 48266 | ||| | || || || | |||| || | ||||| || || | ||||| Sbjct 914110 TATTCTTAATGTACCAAT---AGCTGTACATTGTGCTGTATATTCAGGTAGTTCAAAGCT 914166 Query 48267 AACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAAT 48326 || |||||||| || ||||| | | |||||| || |||| ||||| | | || Sbjct 914167 CACTTTTACATGGCTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATAT 914226 Query 48327 AACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCATA 48386 | | || ||| || || ||| || |||||||| || ||||||| ||| | Sbjct 914227 TAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAAA 914286 Query 48387 AATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTC 48446 || ||||| ||||| | |||||||| | | | || | | | |||||||| || Sbjct 914287 TATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACCCCATGAACTTC 914346 Query 48447 ATACCCCTTTTCAAGAAGAAGTTCTGCT-AAGTATGAACCATCTTGTCCTGTAATACCAG 48505 ||| || || || | ||| || || ||| || ||||| ||||| |||||||| |||||| Sbjct 914347 ATATCCTTTCTCTAAAAGTAGCTC-GCTCAAATATGACCCATCCTGTCCTGTGATACCAA 914405 Query 48506 TGATTAAAGCAACT 48519 |||| |||||| Sbjct 914406 ATATTAGTGCAACT 914419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493850967120