Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 203 6e-47 seq9 187 4e-42 >seq3 Length=1741454 Score = 203 bits (224), Expect = 6e-47 Identities = 196/250 (78%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||| || || | ||||| ||| |||||||| ||||| ||||| ||| || Sbjct 1503662 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 1503721 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 1503722 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1503781 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| ||| ||||| || | ||||| || ||||| || ||||| Sbjct 1503782 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA---GTAAAA--TAATTATTTTAA 193385 || |||| ||||||||||| ||||||||||| || |||||| ||| || ||| | Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTAAAAAGTAAATAATTTGA 1503901 Query 193386 ATAATATATA 193395 | || ||||| Sbjct 1503902 AAAAAATATA 1503911 >seq9 Length=1049758 Score = 187 bits (206), Expect = 4e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| | || | || || |||| ||||| || ||| Sbjct 615591 ATTTGCATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTA 615650 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| ||||| ||| |||||||||||||| || || |||||||| |||||| Sbjct 615651 TAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGA 615710 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || |||||||||||||| ||||| | ||| | |||| ||||||||| || Sbjct 615711 TCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGAT 615770 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || ||||| || |||| |||||||| || |||||||| Sbjct 615771 GGTTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 179 bits (198), Expect = 7e-40 Identities = 182/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| | || | || | ||| || || | ||||| ||| || Sbjct 615362 AATTTGCATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTT 615421 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || |||| |||| || || |||||||||||||| ||||||||||| ||||| Sbjct 615422 ATAATCAGATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTG 615481 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| ||||||||||||||||| ||||| | ||| | |||| ||| ||||| || Sbjct 615482 ATCAGGAGGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGA 615541 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || ||||| || |||| ||||||||||| |||||||| Sbjct 615542 TGGTTCAACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 176 bits (194), Expect = 8e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| |||| | || | ||| || || | ||||| || || Sbjct 615818 AATTTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTT 615877 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| ||||| ||| |||||||||||||| |||||||||||||| || || Sbjct 615878 ATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTG 615937 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || |||||||||||||| ||||| | ||| | |||| ||| |||||||| Sbjct 615938 ATCAGGAGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCGGA 615997 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 | |||||| || || ||||||||||| |||| Sbjct 615998 TGGCTCAACATCAAGGGTTATAGTTTTTCCTG 616029 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| |||| | || | ||| || || | ||||| || ||||| || || Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615202 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || ||||| ||| || ||||||||||| |||||||||||||| || |||||||| || Sbjct 615203 TAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 615262 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| ||||| | ||| | |||| ||||||||| || | |||||| Sbjct 615263 GATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAAC 615322 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||| || |||| |||||||| || |||||||| Sbjct 615323 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653657785120