Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 seq9 159 5e-34 seq3 136 6e-27 >seq2 Length=1775135 Score = 248 bits (274), Expect = 1e-60 Identities = 571/847 (67%), Gaps = 27/847 (3%) Strand=Plus/Plus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| | ||| | || || |||||||| || ||||||| || |||||||| Sbjct 183218 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAA 183277 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAA 17982 | ||| || ||||||||| | | | || ||| ||| | ||| Sbjct 183278 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAA 183337 Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTA 18041 ||||| ||| || |||||||||| ||||| ||||| || || ||||||| || | || Sbjct 183338 TAATCGATCAGCAACAAATTCGATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTA 183396 Query 18042 GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 |||||| || ||| ||||||| | | |||| ||||| | ||||| | || Sbjct 183397 AATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 183456 Query 18102 TGTTTATTAC--CCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 | || || ||| || ||| |||||||| || ||||| | |||||| Sbjct 183457 TATTCTGAACAACCTC--TTCTGGTAATTTATTTTCTAACAAGCTATAA---ATTAAACA 183511 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| |||||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 183512 ATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACC 183571 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 | | | | || | ||||| | ||||||||| | || || | | ||| ||||| Sbjct 183572 GTGTAATTTATTTTGCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATAT 183631 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-A 18338 || || || || || |||| | ||||||||||||| | |||| | ||| | | Sbjct 183632 TCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA--GAATTTGTA--TCATTTA 183687 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||||||| ||||||| | ||| || |||||| | || ||||||| || Sbjct 183688 TCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAA 183747 Query 18399 ACAAAT----CATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | |||| | ||| |||| ||| || |||||| | || ||||| ||| ||| Sbjct 183748 ATAAATTTAACCTCTCCTTCTC----ATCCTTAATATAATTATCAATTAATAAACTATAT 183803 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||||| ||||| |||| | |||||| |||||| ||||||| | |||| || Sbjct 183804 GTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATT 183863 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||| | ||| || ||||| || ||| ||||||| || ||||| || ||| || Sbjct 183864 ATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGC 183922 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-C 18632 ||| |||||||| || |||| ||| || |||||||||||||| | || | ||| ||| Sbjct 183923 TGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTA-ATTTTTCAA 183981 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | || | | ||| |||||| ||| | |||||| | |||||||| || | ||| || | Sbjct 183982 AGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTT 184041 Query 18693 GTTTGTA 18699 ||| || Sbjct 184042 TTTTATA 184048 >seq9 Length=1049758 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || ||||||||||| || || | || || ||| ||| Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| |||||||||||||| || ||||| || ||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||||| || || | ||||| | |||| |||| |||||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAAC 615419 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| | |||||||| |||||| ||||||| ||| Sbjct 615418 ATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGGT 615371 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| || |||||||| || || | || || || || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| |||||||||||||| || || || || || Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| |||| |||||||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| | || | |||||||| |||||||||||||| ||| Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 615143 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| || |||||||| || || | || || ||| || Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||| |||||||||||||| || || || || ||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 615707 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | || || || || | |||||| |||||| ||||| || ||||| Sbjct 615706 CAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAAC 615647 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| | || | || ||||| |||||||||||||| ||| Sbjct 615646 ATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGGT 615599 Score = 132 bits (146), Expect = 7e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || || || || |||| ||| ||| || ||| ||| Sbjct 616027 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCAAAA 615968 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || ||||| || || |||||||| |||| ||| || || || Sbjct 615967 ATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAACAA 615908 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | |||||| ||||| ||||| |||||||| ||| ||||| | || | |||||| Sbjct 615907 TTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATTTA 615848 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 615847 GTTTTAAGATTAAGAGGAGGT 615827 >seq3 Length=1741454 Score = 136 bits (150), Expect = 6e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| || |||||||| || || | || || ||| Sbjct 1503874 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1503815 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||| || ||| ||||| |||||||||||||| || || || || Sbjct 1503814 TCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 1503755 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| |||| || || || || | |||||| |||||||||||| || ||| Sbjct 1503754 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTAT 1503695 Query 156000 AATAT 156004 || || Sbjct 1503694 AACAT 1503690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871396205600