Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 289 6e-73 seq9 199 8e-46 seq3 168 1e-36 seq8 84.2 4e-11 >seq2 Length=1775135 Score = 289 bits (320), Expect = 6e-73 Identities = 551/802 (69%), Gaps = 24/802 (3%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||| | ||| || |||||||||||| | || || | ||| Sbjct 183262 CTTGTAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAA 183320 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| || |||||||| | ||||| ||||| | | Sbjct 183321 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCGATGTATTGAGACATAAGTCTT 183380 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 183381 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 183440 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || ||| | | | Sbjct 183441 ACTGCTTCTTTAACTATATTCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCT- 183499 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| |||||| || ||||| || || |||||| || |||||||| Sbjct 183500 ---ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATT 183556 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | |||||||| ||||||||||| ||| | Sbjct 183557 ACTAAATGTTAAACCGTGTAATTTAT-TTTGCTTTTTAAACCAAAATATTGCACAAAAGC 183615 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || |||||||| ||| |||| |||||| | ||| | | Sbjct 183616 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGA 183673 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| || ||||| |||||| ||||| || | ||||||| Sbjct 183674 ATTTGT-ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATAT 183732 Query 50050 TTTCTATAGCTTTAAATAATTCAttt---ttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 |||| ||||| | |||||| |||| | || | | Sbjct 183733 TTTCAATAGCATGAAATAA---ATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAA 183789 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 |||||||| ||| ||||||| |||| | ||| | |||||||||||| |||||||| | Sbjct 183790 TTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACT 183849 Query 50167 GTCTTGCTTCTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 | | ||||| | || || || || || ||| | | ||||| || |||| Sbjct 183850 TTTTAGCTTC-AATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACT 183908 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 || |||||| ||||| || |||||||| || | ||| ||||||||||||||||| | Sbjct 183909 ATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACA 183968 Query 50286 TTTAAATTTTCCCAAG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAA 50343 ||| |||||| | ||| ||||| ||| |||||||||||| |||||| ||||||| Sbjct 183969 TTT-AATTTTTCAAAGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAA 184026 Query 50344 ATGATGCTACGGATTTTTTATA 50365 |||| ||| | | ||||||||| Sbjct 184027 ATGAGGCTTCAGCTTTTTTATA 184048 >seq9 Length=1049758 Score = 199 bits (220), Expect = 8e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| ||||| |||||||||| ||||| || ||||| ||| Sbjct 615597 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCA 615656 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| |||| || |||||||| ||||| ||||||||||| |||||||||||| Sbjct 615657 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGT 615716 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| |||| |||||| | ||| Sbjct 615717 GGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCA 615776 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || ||||||||||| | || || ||||| Sbjct 615777 ACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| ||||||||||| || | ||||| || ||||||||||| Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615202 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| | |||| ||||||||||| |||||||| |||||||| || ||||||||||| Sbjct 615203 TAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 615262 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| |||||| ||| ||||| |||| |||||| | || || Sbjct 615263 GATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAAC 615322 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||||||||| | || || ||||| Sbjct 615323 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| || | ||| ||||||||||| || | ||||| || ||||||||| Sbjct 615369 ATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCA 615428 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||||| | || ||||||||||| || || || |||||||| ||||||||||| Sbjct 615429 GATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGA 615488 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| || | ||| || | ||| Sbjct 615489 GGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCA 615548 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| |||||||| ||||| | ||| || ||||| Sbjct 615549 ACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||||||||| || | ||||| || ||||||||| Sbjct 615825 ATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCA 615884 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | |||| || |||||||| |||||||| |||||||| || |||||||| Sbjct 615885 GATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGA 615944 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| || | ||| || | || Sbjct 615945 GGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCA 616004 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || || || || ||||| || Sbjct 616005 ACATCAAGGGTTATAGTTTTTCC 616027 >seq3 Length=1741454 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | ||||| || ||||| |||||||| |||| |||| Sbjct 1503659 TATTACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATC 1503718 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| Sbjct 1503719 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1503778 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| || | ||| || | ||| || || ||||| || || Sbjct 1503779 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1503838 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1503839 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1503874 >seq8 Length=1149163 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 825038 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 825096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479167499100