Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 271 1e-67 seq9 190 4e-43 seq3 165 1e-35 seq8 84.2 4e-11 >seq2 Length=1775135 Score = 271 bits (300), Expect = 1e-67 Identities = 569/845 (67%), Gaps = 20/845 (2%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || || |||||||||| ||| ||||||| Sbjct 183217 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTA 183276 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 183277 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAACAACCTAAACATTCT 183335 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||| | ||||| |||| | | ||||||| || | | Sbjct 183336 AATAATCGATCAGCAACAAATTCGATGTATTGAGACATAAGTCTTGAATTCATTCCAATT 183395 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| | Sbjct 183396 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 183455 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | || || |||||||| || ||| | | | ||| | |||||| Sbjct 183456 ATATTCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCT----ATAAATTAAACA 183511 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| || ||||| ||||| |||||| || |||||||||||||| ||||| || Sbjct 183512 ATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACC 183571 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || | |||||||| ||||||||||| ||| || | | ||| |||| Sbjct 183572 GTGTAATTTAT-TTTGCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATA 183630 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT-TATCATCTAAA 39305 | || || ||||| ||| |||| |||||| | |||| | | || |||||| | Sbjct 183631 TTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA-AGAATTTGTATCATTT--- 183686 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| || ||||| |||||| ||||| || | ||||||||||| ||||| | | Sbjct 183687 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGA 183746 Query 39366 AATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 ||||| | | ||| || Sbjct 183747 AATAAATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTT 183806 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA- 39484 ||||| |||| | ||| | |||||||||||| |||||||| | | ||||| | || Sbjct 183807 TCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTC-AATTAT 183865 Query 39485 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || || || || ||| | | ||||| || |||| || |||||| ||||| Sbjct 183866 TTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGC 183925 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG- 39603 || |||||||| |||| ||| ||||||||||||||||| | ||| |||||| | ||| Sbjct 183926 AAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTT-AATTTTTCAAAGT 183984 Query 39604 -ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 ||||| ||| |||||||||||| |||||| |||||||| || ||| | | |||| Sbjct 183985 CTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTT 184043 Query 39663 TTATA 39667 ||||| Sbjct 184044 TTATA 184048 >seq9 Length=1049758 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| |||| ||| ||||||||||| || | ||||| ||| |||||||| Sbjct 615369 ATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCA 615428 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | ||| |||| ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 615429 GATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGA 615488 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| || ||||| || | ||| Sbjct 615489 GGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCA 615548 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| |||||||| ||||| | || || ||||| Sbjct 615549 ACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| ||||||||||| || | ||||| || |||||||| || Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615202 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | | || ||||||||||| ||||||||||||||||| || || |||||||| Sbjct 615203 TAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 615262 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| |||||| ||| ||||| ||||||||||| | || || Sbjct 615263 GATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAAC 615322 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| || ||||||||||| | ||| || ||||| Sbjct 615323 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| ||||| |||||||||| ||||| || ||||| || Sbjct 615597 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCA 615656 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||| ||||| || |||||||| ||||| |||||| Sbjct 615657 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGT 615716 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| ||||||||||| | ||| Sbjct 615717 GGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCA 615776 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || ||||||||||| | ||| || ||||| Sbjct 615777 ACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||||||||| || | ||||| || |||||||| Sbjct 615825 ATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCA 615884 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || || |||||||| ||||||||||||||||| || || ||||| Sbjct 615885 GATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGA 615944 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || ||||| || | || Sbjct 615945 GGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCA 616004 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || || || || ||||| || Sbjct 616005 ACATCAAGGGTTATAGTTTTTCC 616027 >seq3 Length=1741454 Score = 165 bits (182), Expect = 1e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | ||||| ||| ||||| || ||||||| || | || Sbjct 1503659 TATTACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATC 1503718 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || |||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 1503719 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1503778 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| ||| ||||| || ||||| || | ||| || || ||||| || || Sbjct 1503779 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1503838 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || ||||||||||| | || || |||||||| Sbjct 1503839 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1503874 >seq8 Length=1149163 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 825038 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 825096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135253262800