Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 230 7e-55 seq12 136 1e-26 seq11 122 3e-22 seq4 114 4e-20 seq6 84.2 6e-11 seq2 84.2 6e-11 >seq9 Length=1049758 Score = 230 bits (254), Expect = 7e-55 Identities = 795/1226 (65%), Gaps = 38/1226 (3%) Strand=Plus/Plus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || |||||||| || | |||| | | |||||| || | Sbjct 572955 TTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCTATTTAATTCTTTAGCTTCAT 573014 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 573015 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 573069 Query 155426 AATACCGACTGGGCGATGCCTGTAATT-GCTCCTGCTTGTCTTCTTGT-TTGGGTAAAAA 155483 || || | || | ||| || | ||| | || | | | |||||| |||||||| || Sbjct 573070 TATTCCAATAGGCCTATGTCTTTTATTTGATCTTTC--GGCTTCTTTAATTGGGTAATAA 573127 Query 155484 TTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTC 155543 || |||||||| |||| ||||||| || | | || || | || |||||| Sbjct 573128 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 573187 Query 155544 ACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCCAGA 155600 | | | |||| |||| | ||| || ||||| ||| | |||| || || ||| Sbjct 573188 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGA 573247 Query 155601 TTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGTTAG 155658 ||||| || || || | | || | ||||| || ||||| ||||| || | ||| Sbjct 573248 TTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAACAATTTCACAACATAAATTAC 573305 Query 155659 AACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATA 155718 || || || || |||||||| || || ||||||||| || || ||||| || |||| Sbjct 573306 TACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATATA 573365 Query 155719 GAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGG 155778 || ||||| || || || || || | | || | ||| | || | | Sbjct 573366 ACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGTG 573425 Query 155779 CATTAATTTGCTTGTTGTATCTGCC-----TTCCGACTCATATTTCATATACAGCGTTCG 155833 || || | ||| | | | || ||| | || ||||| |||| | || Sbjct 573426 CAAGAACT-----GTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATATAATTTTTC 573480 Query 155834 GTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA 155893 | || ||||| || | ||||| | || ||||| | || ||||| | | | ||| Sbjct 573481 AAATTCTTCACCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCACATTAAAGTCCA 573540 Query 155894 AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAG 155953 ||||||| | |||| | | |||||||| |||| ||||||||||||| || | Sbjct 573541 GTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAA 573600 Query 155954 GTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAAT 156013 || | || | | || || | |||||||| || | || ||||| ||||| ||| Sbjct 573601 ATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAAT 573660 Query 156014 ATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTG 156070 ||| | || ||| || | ||| | ||||||| ||| || || || |||||| || Sbjct 573661 ATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGCCACCTTG 573720 Query 156071 ATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGT 156130 ||||||||| | || || | ||| || || | || ||| |||| | |||||| || | Sbjct 573721 ATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATAT 573780 Query 156131 GCCATTGGTTCCGCGAATATGCGAACCAGATGA--GCGAACATTATGAATATGTAGTCCA 156188 ||||| ||||| | ||||| ||| ||| | || || || | | | || Sbjct 573781 ACCATTAGTTCCTCTAATATAAGAA--TTTTGACCTCTAATATCTTGTACAGCAACACCT 573838 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 ||||| |||| |||| |||| || |||| ||||| || | || |||||||| Sbjct 573839 ATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAATATACCTTCT 573898 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 || |||||| || ||| |||| || | |||| ||| | ||| || | ||||||||| Sbjct 573899 ATCGAATCAGATTTCATCGATAATAAAAAGCATGAAGACATTTGGGGCCTTGGTGTTCCC 573958 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 | || |||| ||| || || |||||| ||||||| || | |||||| ||| || || Sbjct 573959 GAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGATAAGTT 574018 Query 156369 TCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGC 156428 || | ||| ||||||| | || || | ||||| || ||||| | | ||| Sbjct 574019 TCTAAAGCCTTTTCAAGATCATCAATATGTATTCCTATAGATACTCTCATTAATAAATGT 574078 Query 156429 TGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTA 156488 ||||| || || | ||| || ||| || | | ||| | | || | |||||| Sbjct 574079 TGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTCTCTAATGTTTTA 574138 Query 156489 AACCCGAAATAATCAAACAGAAAATC 156514 || || ||||||||| | |||||| Sbjct 574139 AATCCAAAATAATCATAATTAAAATC 574164 >seq12 Length=649772 Score = 136 bits (150), Expect = 1e-26 Identities = 231/335 (69%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| ||| || ||||| ||||| ||||| |||| | || || | || || | Sbjct 586135 CTTCTTTTAGAACCCACTGCATCTATTTCATCAATAAAAACAATGCAAGGTGCATGTTTT 586076 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || || || | ||||||| | ||| || | ||||||| |||||||| || Sbjct 586075 TTTGCGGTTTGGAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 586016 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | ||||||||||| ||||| | ||||| || Sbjct 586015 AATTCTGAACCAGATGCTTGGATAAAAGGCACATTTGCTTCCCCTGCAATAGCCCTAGCA 585956 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| || ||||| | || || || | |||||| Sbjct 585955 ATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATATACCTTTGGGCAATTTTGCA 585896 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 || || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 585895 CCTATTTTAGTAAATTTATCTGAATTTTTTAAATAATCGATTATTTCTTGAAGTTCTTGT 585836 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | |||||||||||| |||||| || ||||| Sbjct 585835 TTTACTTCATCACATCCTTTTACATCTGCTAAAGT 585801 >seq11 Length=775211 Score = 122 bits (134), Expect = 3e-22 Identities = 274/404 (68%), Gaps = 21/404 (5%) Strand=Plus/Minus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 ||||||| ||| ||| | | |||||| | | |||||||||||| | || Sbjct 160899 AATGTAAGAATATGGGAAGCTAATGGAACAAGAGAGTTTTTAGATAATAGGAAATTATTT 160840 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| |||| || || || ||||| |||||||| |||||||| ||| || Sbjct 160839 CATAGAGAAGTTAATGATCTAGGCCCAATTTATGGATTTCAATGGAGACACTTTGGTGCT 160780 Query 381082 GATTATGATAATTGTG-ATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| | | | || || |||||||| | ||| ||||| || ||||||||| |||| Sbjct 160779 GAATAT-ACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATAT 160721 Query 381141 CATAGACC-AGCTAAAAA--ATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGC 381197 || | | |||||| |||| |||| | | | ||| | ||| || ||| Sbjct 160720 TATCAATTTAATTAAAAACGATCC---AACATGTA------GGCGAATTATTTTGTGTGC 160670 Query 381198 GTGGAATCCTTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAG 381255 |||||| | ||||| | | | ||||| ||||| ||||| ||||||||||| || Sbjct 160669 ATGGAATG--TAAAAGATTTAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCAA 160612 Query 381256 TTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTT 381315 || |||||| | ||| || ||| ||| | | ||||| || ||||| | Sbjct 160611 TTTTATGTTTTTGATGGAAAA---TTATCATGTATTATGTATCAACGATCTTGTGATTTA 160555 Query 381316 GGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTAC 381359 || || ||||||||||| ||||||||||| |||||||| |||| Sbjct 160554 GGGCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTAC 160511 >seq4 Length=1703499 Score = 114 bits (126), Expect = 4e-20 Identities = 319/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || |||| | || | || || ||||| |||||| ||| |||||| || Sbjct 571440 CTATCAAATCTTCCAGGTCTTGTAATAGCGGGATCTAAAATATCGATTCTATTTGTTCCT 571499 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || || || | Sbjct 571500 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCAACAAGCATCT 571557 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | ||| || || Sbjct 571558 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCTTTCGATC-TT 571616 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| ||||||||||| ||||| ||||| ||||| | | | || | || || ||| || Sbjct 571617 TTTCGCCCAACAGCATCTATTTCATCAATAAAAATAATAGATGGTGCATGTTTTCTTGCT 571676 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||||||||||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 571677 TGTGCAAATAATTCTCTAACTCTTGATGGTCCTATTCCTACAAATACTTCAATAAAATCA 571736 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | | || || | || || || || || || || || | || | || Sbjct 571737 CTTCCACTAATATTAAAAAAGGGAACGTTAGCCTCACCAGCAACAGCTTTTGCTAATAGA 571796 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || ||||| |||| || ||||| | || ||||||| |||||| || | Sbjct 571797 GTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-TAA 571855 Query 289264 GACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 |||| |||||| | || | || ||||| || |||| ||| || ||| | |||||| Sbjct 571856 TACTTGATATTTTGCTGGATTTTTCAAAAAATCAACAAACTCCATAATTTCTTCTTTTGC 571915 >seq6 Length=1276811 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 341001 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 340943 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 340942 AAACCCACATGGATCATT 340925 >seq2 Length=1775135 Score = 84.2 bits (92), Expect = 6e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| | ||||| ||||||||| || ||||| | | Sbjct 1414004 ATTTCTCACTGTTCTATCATACTGTACCATAACATCTTCCATAGCTTTAATTAATCTTCT 1413945 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || |||||||||||| |||||||| ||| |||||||| | ||| | | ||| || Sbjct 1413944 TTGTATATAACCAGTTTCTGATGTTTTACAAGCAGTATCAATAATACCTTCTCTACCTCC 1413885 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 ||||||||| || || | |||| ||| |||||| Sbjct 1413884 CATAGCATGAAAAAACACTTCTTGTGGTGTTAGCCC 1413849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816355394242