Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq11 136 5e-27 seq15 111 2e-19 >seq11 Length=775211 Score = 136 bits (150), Expect = 5e-27 Identities = 319/470 (68%), Gaps = 25/470 (5%) Strand=Plus/Minus Query 172529 TGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 172588 |||| ||||||||||||||||||||||||||||||| || ||| |||||| || | Sbjct 160825 TGATCTAGGCCCAATTTATGGATTTCAATGGAGACACTTTGGTGCTGAATATACAGA-TA 160767 Query 172589 TG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTA- 172646 || || | ||||| | || |||| || || || |||| ||| ||||| | |||| Sbjct 160766 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATCAATTTAA 160710 Query 172647 --CAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAAC 172701 ||||| | ||| | |||| | | ||| || | || ||||||||| | Sbjct 160709 TTAAAAACGATCCAACATGTAGGCGAA--TTATTTTGT-GTGCATGGAATGTAAAAGATT 160653 Query 172702 TTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATG--TCAGaaaaaa 172759 | |||||||||| | |||||||| |||| |||| |||||||||| | || || Sbjct 160652 TAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 160593 Query 172760 aTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTA 172819 | ||| | ||| | |||||| |||| ||||||||| | || || || | Sbjct 160592 AATTATCATGTATT-----ATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCATT 160538 Query 172820 TAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACT 172877 |||||||| | ||||| || |||| ||| | || || || || |||||| Sbjct 160537 TAATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAA 160480 Query 172878 CCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCT 172937 |||| | ||||| ||| || ||| ||| ||| || ||| |||||||||||| Sbjct 160479 CCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGC 160420 Query 172938 TTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172987 ||||| |||| ||||| |||| ||| ||| |||| || | ||||||| Sbjct 160419 TTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCCTTCTCTTAAATT 160370 >seq15 Length=364150 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 194586 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 194645 |||||| |||||||||||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 177400 TAAAATATTTATAGGGCCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 177341 Query 194646 GCATGCTAGAAGTCATGGGCAAGTAACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 194704 ||||| |||||| |||| |||||| ||||| ||||||||| || | | Sbjct 177340 ACATGCCAGAAGTAGAGGGCCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 177282 Query 194705 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 194764 | || ||| |||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 177281 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTATGATATCTCATGGAT 177222 Query 194765 CTACTCAATTCTTAAATGAA 194784 || || || | ||||| ||| Sbjct 177221 CTGCTAAAATGTTAAAGGAA 177202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489078196080