Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq9 131 2e-25 >seq3 Length=1741454 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| ||||||| ||||| || || || || || ||| | | Sbjct 1503871 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCT 1503812 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| ||| |||||||| ||||||||||| || || |||||| Sbjct 1503811 GATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 1503752 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || || || || ||||| | || ||| |||| | || || |||||| Sbjct 1503751 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATAAC 1503692 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || |||| ||||| Sbjct 1503691 ATTCAAAAAGAATCAACCTTACATTTGGT 1503663 >seq9 Length=1049758 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| |||| || ||||| || || || || || ||| | | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || |||||||| ||||||||||| ||||| |||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || || ||||| ||||| |||| || ||| | || ||||||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAAC 615419 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||||||| |||||||| |||| || || || Sbjct 615418 ATTCAAAAAGAATCGACCTTACATTTAGTTTT 615387 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||||| ||||| || || ||||| || || |||| | Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGA-GCCATC 615312 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| || || ||||| |||||||| || || || ||||| Sbjct 615311 AGATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615252 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | || || ||||| || ||||| |||| ||| |||| | || |||||||| Sbjct 615251 GCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAA 615192 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||| ||||| || |||| || || || |||| | ||||| Sbjct 615191 CATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGG 615144 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCA-CCGACACAGTAGAAACGGTAAAACAAAA 24789 || |||||||| || || || || || |||| |||| || | |||| || ||| ||| Sbjct 616027 GGAAAAACTATAACCCTTGATGTTGA-GCCATCCGATACCATTGAAAATGTTAAAGCAAA 615969 Query 24790 GATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACA 24849 || ||||| |||||||| || ||||| ||||| ||| | || || ||||| || ||||| Sbjct 615968 AATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAACA 615909 Query 24850 GCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTT 24909 | || ||| |||| | || ||||||||||| ||||| ||||| || |||| || Sbjct 615908 ATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATTT 615849 Query 24910 GGTGTTGCGATTGCGCGGAGG 24930 || || |||| | ||||| Sbjct 615848 AGTTTTAAGATTAAGAGGAGG 615828 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| || || || || ||||| || || | ||||| |||||||| Sbjct 573235 AATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACA 573294 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||| ||||||||||| || || || |||||||||| |||||| ||| || || || Sbjct 573295 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGC 573354 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 |||||| || | |||||| ||| |||||||| | ||| Sbjct 573355 ATCTTTATATAACATATATGGTACACCAGTTTCAATTTG 573393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897228834480