Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq9 215 8e-51 seq3 179 6e-40 >seq9 Length=1049758 Score = 215 bits (238), Expect = 8e-51 Identities = 186/228 (82%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| ||||||||||||| ||||||||||| ||| | ||||| || | || | Sbjct 615369 TGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA- 615311 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||||| ||| |||||| ||| ||||||||| || ||||| ||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| || |||||||| || ||| ||||| || | |||||||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 |||||||||||||| || | |||||||| ||| |||||||||||||| Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 615143 Score = 212 bits (234), Expect = 1e-49 Identities = 186/229 (81%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| ||||||||||||| ||||||||||| ||| | ||||| |||| || | Sbjct 615825 TGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA- 615767 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||||| ||| ||||| ||| ||||||||| || ||||| |||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 615707 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || || || || ||||||||||| ||| ||||| ||| | || ||||| Sbjct 615706 CAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAAC 615647 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||||||||||||| ||| | || ||||| ||| |||||||||| |||| Sbjct 615646 ATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGGTA 615598 Score = 196 bits (216), Expect = 8e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| ||||| ||||||||||| ||| ||||||| |||| | Sbjct 615597 TGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCTG 615538 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||| ||||| || ||||||| Sbjct 615537 ATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAAC 615478 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || |||||||| || || |||| || | |||||||| | Sbjct 615477 AAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAACA 615418 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||||||||| | |||||||| ||| || |||||||||||| Sbjct 615417 TTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGGTA 615370 Score = 179 bits (198), Expect = 6e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATA 146115 |||||||||| || || ||||||| || | |||||| ||| ||||||| ||| | Sbjct 616029 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCAA 615970 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| ||| ||||||||| || || || ||||| |||||| | |||||||| || |||| Sbjct 615969 AAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAAC 615910 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATT 146235 ||||||| ||| ||||| ||| | |||||||| |||||||||||||| || | |||| Sbjct 615909 AATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATT 615850 Query 146236 TAGTATTACGATTAAGAGGAGGTA 146259 |||| ||| ||||||||||||||| Sbjct 615849 TAGTTTTAAGATTAAGAGGAGGTA 615826 >seq3 Length=1741454 Score = 179 bits (198), Expect = 6e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| | Sbjct 1503870 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCTG 1503811 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| ||| ||||||||| ||||| || ||||||| Sbjct 1503810 ATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAAC 1503751 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||||||||||| ||| ||||| ||| | || ||||| | Sbjct 1503750 AAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATAACA 1503691 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | ||||||||||| || | ||||| ||| || Sbjct 1503690 TTCAAAAAGAATCAACCTTACATTTGGTAATA 1503659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165751412720