Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 seq9 143 2e-29 >seq3 Length=1741454 Score = 154 bits (170), Expect = 1e-32 Identities = 168/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || |||||||||||||||||||| || | | || | ||| || Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | |||| ||| ||| |||| | || ||||| |||| || |||||||| || ||||| Sbjct 1503783 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1503842 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT--AAAACGTA 29797 || ||||| ||||| ||||| || |||||||| ||||||| Sbjct 1503843 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTA 1503884 >seq9 Length=1049758 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || ||||||||||||||||||||||| | | || || || || Sbjct 615390 ACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCC 615449 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || || | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 615450 AATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGG 615509 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| ||| ||| |||| | || ||||| |||| || |||||||| || ||||| Sbjct 615510 ATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 615569 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| ||||| || ||||| Sbjct 615570 CCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || ||||||||||| ||||||||||| | Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615203 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | |||||| |||||| | || |||||||||||||| || || Sbjct 615204 AGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 615263 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||| | ||| ||| |||| | ||| || || | || || Sbjct 615264 ATACCTTCTTTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAAC 615322 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 615323 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 129 bits (142), Expect = 5e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || ||||||||||| |||||||| || | | || | ||| || | |||||| ||| Sbjct 615630 GTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 615689 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || |||||||| ||||| || || ||||| ||||| ||||| |||||||| ||| Sbjct 615690 GCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTG-AATTTTTGCTTT 615748 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| | ||| || || |||| || || ||||| || ||||| || ||||| || Sbjct 615749 AACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGT 615808 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || || ||||| Sbjct 615809 TTTTACGAAAATTTGCAT 615826 Score = 125 bits (138), Expect = 6e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || ||||||||||| ||||||||||| | Sbjct 615828 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615887 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | |||||| |||||| | || |||||||||||||| || || Sbjct 615888 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGG 615947 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||||| ||| ||| |||| | || || || | || || Sbjct 615948 ATACCTTCTTTATCTTG-AATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCAAC 616006 Query 29739 TTCAAGAGTTATAGTTTTGCC 29759 ||||| ||||||||||| || Sbjct 616007 ATCAAGGGTTATAGTTTTTCC 616027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218890139306