Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq15 105 8e-18 >seq15 Length=364150 Score = 105 bits (116), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||||||||| | |||||| | | ||||||||||| | |||||||| Sbjct 177400 TAAAATATTTATAGGGCCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 177341 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 ||||| |||||| || | | |||| ||||| ||||||||| || | | Sbjct 177340 ACATGCCAGAAGTAGAGGGCCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 177282 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||||||||||||||||||||||| ||| ||||| || |||||| Sbjct 177281 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTATGATATCTCATGGAT 177222 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 177221 CTGCTAAAATGTTAAAGGAA 177202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177075978480