Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq11 127 3e-24 seq15 104 3e-17 seq2 104 3e-17 >seq11 Length=775211 Score = 127 bits (140), Expect = 3e-24 Identities = 425/644 (66%), Gaps = 23/644 (4%) Strand=Plus/Minus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| ||||||||||| ||| | ||| | | |||||||||||| || ||| ||| | Sbjct 161021 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTGTAAGA 160966 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAAT 180475 ||| || |||| ||||||||| | || | || ||||||| ||| ||| Sbjct 160965 GGTATCATTGAAGAGTTATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 160906 Query 180476 GATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGA 180535 || | ||| | | | ||| | | |||||| | | ||||||||||| | | | Sbjct 160905 GAAAAAAATGTAAGAATATGGGAAGCTAATGGAACAAGAGAGTTTTTAGATAATAGGAAA 160846 Query 180536 TTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATG 180593 || |||| | || ||| |||| |||| |||||||||||||||||||||||||| Sbjct 160845 TT--ATTTCATAGAGAAGTTAATGATCTAGGCCCAATTTATGGATTTCAATGGAGACACT 160788 Query 180594 CAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTA 180652 || ||| |||||| || | || || | | |||| | ||||| | || || ||| Sbjct 160787 TTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTA 160729 Query 180653 AGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGT 180712 | | |||| | || ||||| |||| ||| | |||| || | | Sbjct 160728 AAAAATATTATCAATTTAATTAAAAACGATCCAACATGTAGGCGAATTATTTTGTGTGCA 160669 Query 180713 TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTT 180772 ||||||||| | | ||| | ||||| | || || ||||| ||| |||||| Sbjct 160668 TGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTT 160609 Query 180773 TATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAG 180830 |||| || || |||||| | ||| |||||||| ||||| ||||||| Sbjct 160608 TATGTTTTTGATGGAAAATTATCATGTATT-----ATGTATCAACGATCTTGTGATTTAG 160554 Query 180831 GATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCAAA 180888 | | ||||| |||| ||||||||||| |||||| || ||| ||| || | | | || Sbjct 160553 GGCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC-AA 160495 Query 180889 GTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTC 180948 || || |||||| || | ||||||| || || || ||| |||||| ||| Sbjct 160494 GT-ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAA 160436 Query 180949 TAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCT 180991 ||| ||| |||| ||||||||||| |||| |||| ||||| Sbjct 160435 TAATCATGTTGAAAGCTTAAAAATTCAGTTAAATAGAACACCCT 160392 >seq15 Length=364150 Score = 104 bits (114), Expect = 3e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 177400 TAAAATATTTATAGGGCCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 177341 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 177340 ACATGCCAGAAGTAGAGGGCCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 177282 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| ||||||||||||||||||||| ||||||||| Sbjct 177281 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTAT 177236 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 ||| || |||||||||||||||||| |||||||| |||||||| |||||||||||| | Sbjct 178531 TGGAATAAATGCAATTGTAGCAATTATGTGTTACACAGGATACAACCAAGAAGATAGTTT 178472 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 || | ||| || |||||||||| | ||| |||| Sbjct 178471 AATCATGAATCAATCATCTATTGATCGGGGTCTATT 178436 >seq2 Length=1775135 Score = 104 bits (114), Expect = 3e-17 Identities = 253/380 (67%), Gaps = 14/380 (4%) Strand=Plus/Minus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| |||||||| | ||||| ||||||||||| | || ||| | ||||||||| Sbjct 1130831 TAAAGTTGCTCAACTTGTAGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 1130772 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||| || |||| Sbjct 1130771 ATCATTACAACAAACTATTATAAACATGGCTCAAACATTTGTTGGTTCAAACAATATAAA 1130712 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | ||||| ||| || ||||||| |||| ||||| ||||| ||| || | || Sbjct 1130711 CTTTTTAGAACCTTGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAGGATGCATCAGC 1130652 Query 173068 ATCAAGGTATATTTATACTAAAC-CGCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | | || || |||||||| ||| | Sbjct 1130651 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAA-GTATATTTAATGAATTTG 1130593 Query 173127 ATGACCCTATTTTAA---TTTTTACTCCGGAAGG-----AGAACCAACCAC----TTTTG 173174 |||| || ||||||| ||| | | ||||| | | | |||||| || | Sbjct 1130592 ATGATCCAATTTTAAAATATTTAAATGAAGAAGGGCAAAAAATCGAACCACAATATTATA 1130533 Query 173175 TTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 173234 | || || || ||| || ||| | ||||| | || ||||||||||||| || | Sbjct 1130532 TACCAGTTATTCCTACAATTTTAGTAAATGGGTGTGAAGGAATAGGAACTGGATATTCAT 1130473 Query 173235 GTTTTATTCCTCAATATAAT 173254 |||||||| | |||||| Sbjct 1130472 CATTTATTCCAAACTATAAT 1130453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279459394000