Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq11 131 2e-25 seq2 114 2e-20 seq15 105 8e-18 >seq11 Length=775211 Score = 131 bits (144), Expect = 2e-25 Identities = 440/670 (66%), Gaps = 30/670 (4%) Strand=Plus/Minus Query 171542 AATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGTATATACTA 171601 ||||| |||||||| | | | | |||||| | || ||||||||| || | | || | Sbjct 161021 AATTTAATTTAAGT---GAATATTTTCCATTATTAACAACAAAAAAA-TTATTTGTAAGA 160966 Query 171602 A-TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAAT 171660 |||| || |||| | |||||| |||| | || ||| || ||| |||| Sbjct 160965 GGTATCATTGAAGAGTTATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 160906 Query 171661 GATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGG 171720 || | | ||| | | | ||| | | |||||| | | || ||||||||| || | Sbjct 160905 GAAAAAAATGTAAGAATATGGGAAGCTAATGGAACAAGAGAGTTTTTAGATA-ATAGGAA 160847 Query 171721 TTTACTGAA-AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGC 171779 ||| | | ||| ||| |||| |||| |||||||||||||||||||||||||| Sbjct 160846 ATTATTTCATAGAGAAGTTAATGATCTAGGCCCAATTTATGGATTTCAATGGAGACACTT 160787 Query 171780 AGGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAG 171839 || ||| |||||| || || | ||||| | || |||| || || || |||| Sbjct 160786 TGGTGCTGAATATACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA- 160728 Query 171840 TCAAACTATTAATACTTTA---CAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAG 171896 ||| ||||| | |||| ||||| | ||| | |||| | | ||| || | | Sbjct 160727 --AAAATATTATCAATTTAATTAAAAACGATCCAACATGTAGGCGAA--TTATTTTGT-G 160673 Query 171897 T---TGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACA 171953 | ||||||||| | | |||||||||| | |||||||| || | |||| || Sbjct 160672 TGCATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCA 160613 Query 171954 ATTTTATG--TCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGAT 172011 |||||||| | || ||| ||| | ||| | |||||| |||| |||| Sbjct 160612 ATTTTATGTTTTTGATGGAAAATTATCATGTATT-----ATGTATCAACGATCTTGTGAT 160558 Query 172012 TTAGGATTGGGGGTACCTTATAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAA 172069 ||||| | || || || | |||||||| | ||||| || |||| ||| | || || Sbjct 160557 TTAGGGCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATA--TATGATAG 160500 Query 172070 GTAAATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGT 172129 || || |||||| |||| | ||||| ||| || ||| ||| ||| || | Sbjct 160499 CACAAGTATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTT 160440 Query 172130 ATTCAAATCATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAA 172189 || |||||||||||| ||||| |||| ||||| |||| ||| ||| |||| || Sbjct 160439 ATAATAATCATGTTGAAAGCTTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCCTT 160380 Query 172190 ATGTTAAATT 172199 | ||||||| Sbjct 160379 CTCTTAAATT 160370 >seq2 Length=1775135 Score = 114 bits (126), Expect = 2e-20 Identities = 183/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 165162 TAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACA 165221 ||||||||||||| | || ||| |||||||||| | | ||| | ||||||||| Sbjct 1130831 TAAAGTTGCTCAACTTGTAGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 1130772 Query 165222 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | ||| ||||||| || || | || ||| ||||||||| |||| |||||| Sbjct 1130771 ATCATTACAACAAACTATTATAAACATGGCTCAAACATTTGTTGGTTCAAACAATATAAA 1130712 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 165341 || | |||||| ||| |||||||||| ||| |||||| ||||| ||| | | || Sbjct 1130711 CTTTTTAGAACCTTGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAGGATGCATCAGC 1130652 Query 165342 ATCAAGATATATTTATACCAAAC-CACATAAAATATTAAAATATATATTTAGAGAAGAAG 165400 | | || ||||| | ||| |||| ||| | || || || |||||||| ||| | Sbjct 1130651 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAA-GTATATTTAATGAATTTG 1130593 Query 165401 ATGACCCTATTTTAAATTAT 165420 |||| || |||||||| ||| Sbjct 1130592 ATGATCCAATTTTAAAATAT 1130573 >seq15 Length=364150 Score = 105 bits (116), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 193343 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 193402 |||||| |||||||||||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 177400 TAAAATATTTATAGGGCCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 177341 Query 193403 GCATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193461 ||||| |||||| |||| | |||| ||||| ||||||||| || | | Sbjct 177340 ACATGCCAGAAGTAGAGGGCCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 177282 Query 193462 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 193521 | || ||| |||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 177281 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAGATTGTATGATATCTCATGGAT 177222 Query 193522 CTACTCAATTCTTAAATGAA 193541 || || || | ||||| ||| Sbjct 177221 CTGCTAAAATGTTAAAGGAA 177202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530681461760