Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9 206 5e-48 seq3 187 5e-42 >seq9 Length=1049758 Score = 206 bits (228), Expect = 5e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | ||||||||| | |||||||||||| ||||| ||||| |||| Sbjct 615598 TACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAG 615657 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| |||||||||||| ||||||| |||||||||||| || | Sbjct 615658 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTG 615717 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| | Sbjct 615718 GGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAA 615777 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || ||||| || || ||||| Sbjct 615778 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | | |||||| || | || |||||||| || || |||||||||| Sbjct 615370 TACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAG 615429 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||| |||||||| | ||||||||| || || |||| |||||||||||| |||| Sbjct 615430 ATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAG 615489 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| |||||||| || || ||||| ||||||||||| |||||| ||||| | Sbjct 615490 GAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAA 615549 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || |||||||| || ||||| Sbjct 615550 CATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | |||||| || | || |||||||| ||||| ||||||||||| Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615202 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || ||||| | ||||||||||||||| |||| |||||| ||||| || || Sbjct 615203 TAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 615262 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || ||||| ||||||||||| ||||| || || || Sbjct 615263 GATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAAC 615322 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || || || ||||| || || ||||| Sbjct 615323 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 183 bits (202), Expect = 6e-41 Identities = 163/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||| || | || |||||||| ||||| |||||||||| Sbjct 615826 TACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAG 615885 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| ||||||||||||||| |||| |||||| ||||| |||| Sbjct 615886 ATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAG 615945 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| || || | Sbjct 615946 GGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCAA 616005 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | ||||| || || |||| Sbjct 616006 CATCAAGGGTTATAGTTTTTCCTG 616029 >seq3 Length=1741454 Score = 187 bits (206), Expect = 5e-42 Identities = 160/198 (81%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || |||||||| || || ||||| ||||||| | |||| || ||||||| |||||||||| Sbjct 1503675 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1503734 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 || || |||| |||||||||||| || || |||||||| |||||||| || |||||||| Sbjct 1503735 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1503794 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| |||||| ||||| || || | ||| || || || || || || || Sbjct 1503795 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1503854 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 1503855 TTTACAAAGATTTGCATT 1503872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826369742374