Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 2e-14 >seq9 Length=1049758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| || ||||| ||||| ||||||| ||||| | |||||||| Sbjct 615629 AGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCC 615688 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 | ||||||| |||||||||| | || | || |||| ||||||||||| |||||||| Sbjct 615689 AGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTT 615748 Query 81755 TATATTTTCAATCGTAT 81771 | ||||||||| |||| Sbjct 615749 AACATTTTCAATAGTAT 615765 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || ||||| ||||||||||||| ||||| | |||||||| ||| Sbjct 615862 ATTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAA 615921 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||| ||| | ||| | || |||| ||||||||||| |||||||| | || Sbjct 615922 AAATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 615981 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 615982 TTTCAATGGTAT 615993 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/132 (73%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || ||||| |||||||||||||| ||||| | ||||| || ||| Sbjct 615178 ATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAA 615237 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||| ||| | || | || |||| ||||||||||| || ||||| | || Sbjct 615238 AAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACAT 615297 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 615298 TTTCAATAGTAT 615309 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/132 (73%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || || |||||||||||||| |||| | |||||| || | | Sbjct 615406 ATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGA 615465 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| |||||||| || || ||||| | || Sbjct 615466 AAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACAT 615525 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 615526 TTTCAATGGTAT 615537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903410454685760