Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 284 3e-71 seq11 129 1e-24 seq7 102 2e-16 seq2 95.1 3e-14 seq5 84.2 5e-11 >seq9 Length=1049758 Score = 284 bits (314), Expect = 3e-71 Identities = 615/909 (68%), Gaps = 21/909 (2%) Strand=Plus/Minus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| | || | | || ||| |||||||| || ||||| Sbjct 574190 TAAATAAAGAAATAGATTATACAAGAGATTTTAATTATGATTATTTTGGATTTAAAACAT 574131 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | || | | || ||| | ||| | ||| | || |||||||| |||||||| | | Sbjct 574130 TAGAGAGATCCTACTTATTACGTATTAATAATAAAATTATTGAACGCCCTCAACATTTAT 574071 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATG 110442 | | | || | || || || ||| ||||| || || | | | ||| |||| Sbjct 574070 TAATGAGAGTATCTATAGGAATACATATTGATGATCTTGAAAAGGCTTTAGAAACTTATC 574011 Query 110443 ATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTA 110502 || || | | |||| | || |||||||||||| || ||||||| | ||||| Sbjct 574010 ATTTAATGTCTCAAAAATATTTTACTCATGCTACTCCAACATTATTTAATTCGGGAAC-- 573953 Query 110503 ATGGAGGAC--AATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGG 110560 | ||| | || || |||| |||||| | || || || |||||| || ||||| Sbjct 573952 ACCAAGGCCCCAAATGTCTTCATGCTTTTTATTATCGATGAAATCTGATTCGATAGAAGG 573893 Query 110561 TATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTA 110619 ||| | ||| | |||||| || ||| | ||| ||||| | ||||| || ||| Sbjct 573892 TATATTTGAAACA-TTAAAGCAATGTGCATTAATTAGTAAAACAGCAGGAGGTATAGGTG 573834 Query 110620 TTCACGTTCATGATATTCGC--TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTC 110677 || || || |||||| | |||||| | |||| | | | || ||| || Sbjct 573833 TTGCTGTACAAGATATTAGAGGTCAAAATT--CTTATATTAGAGGAACTAATGGTATATC 573776 Query 110678 AACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG 110737 || ||| | ||||||||||||||||| || || || || |||| |||||| ||||||| Sbjct 573775 AAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGG 573716 Query 110738 TGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATT 110794 ||| || ||||| || || |||||| | ||| | ||||| ||||| |||||||| || Sbjct 573715 TGGCGGAAAAAGAAAGGGTTCTTTTGCTGTATATATTGAACCATGGCACTCAGATATTTT 573656 Query 110795 TGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATT 110854 |||||| ||||| | | |||||||| || |||||| ||||| ||||||||||| Sbjct 573655 TGAATTTTTAGATTTAAGAAAAAATCACGGTAAAGAAGAATTGAGAGCTCGTGATTTATT 573596 Query 110855 TTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTC 110914 |||||| || ||| | | |||||||| |||||| | || | |||||| | ||| | Sbjct 573595 TTATGCTATTTGGGTACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAAAACTGGAC 573536 Query 110915 TCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGA 110974 | | ||||| ||| || | || ||| || ||| | || |||| |||||| | Sbjct 573535 TTTAATGTGCCCTAATGAATGCCCAGGTTTAAGTGAATCTTGGGGTGAAGAATTTGAAAA 573476 Query 110975 CCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGA 111031 | || |||||| ||| |||| || || | ||| ||| ||| || ||||| Sbjct 573475 ATTATATACAAAATACGAAGCAGAA---AATTTGGGAAAAAAAACAGTTCTTGCACAAGA 573419 Query 111032 ACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAA 111091 | ||||| || | || ||| |||||||||| || ||||| || ||||| Sbjct 573418 TTTATGGTTTGCTATATTACAAAGTCAAATTGAAACTGGTGTACCATATATGTTATATAA 573359 Query 111092 AGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATT 111150 |||| ||| ||| ||||||||||||| ||||||||||||||||| | |||||||| Sbjct 573358 AGATGCAT-GCAATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATT 573300 Query 111151 TGTGCTGTG 111159 | || |||| Sbjct 573299 TATGTTGTG 573291 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || || |||||| || Sbjct 573171 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAA 573112 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || || ||||| | ||||| || ||||| || || |||||||||||||| Sbjct 573111 GAAGCCGAAAGATCAAATAAAAGACATAGGCCTATTGGAATAGGAGTACAAGGATTAGCA 573052 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| |||||| |||||| | Sbjct 573051 GATACATTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAGA 572992 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || || || || |||| |||||| Sbjct 572991 AGAATATTTGAGACTATGTATTATGCTGCT 572962 >seq11 Length=775211 Score = 129 bits (142), Expect = 1e-24 Identities = 279/406 (69%), Gaps = 21/406 (5%) Strand=Plus/Plus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||||||| | ||| ||||| Sbjct 160604 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTTATCTAAATCTTTTACA 160663 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAA-TAAGTTCTTCACA 59055 |||||||||| |||||||| || | | | || || ||||||| ||| || | | Sbjct 160664 TTCCATGCACACAAAATAATTCGCCTACATGTTGGATCGTTTTTAATTAAATTGAT-AAT 160722 Query 59056 ATGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATC 59112 || ||||| || |||| || ||| |||| |||| || ||| | |||| | | Sbjct 160723 ATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGC 160782 Query 59113 TCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAGTTCCTTCAGGATATTCATT 59172 || | | | ||||||||| ||||| | || || ||| || || | | || | Sbjct 160783 ACCAAAGTGTCTCCATTGAAATCCATAAATTGGGCCTAGA--TCATTAA--CTTCTCTAT 160838 Query 59173 TAAACCA----CGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACAT 59228 ||| | | | || | ||| ||||||||| |||| | ||||| || |||| Sbjct 160839 GAAATAATTTCCTATTATCTAAAAACTCTCTTGTTCCATTAGCTTCCCATATTCTTACAT 160898 Query 59229 TATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCT 59285 | || || ||| | || |||| || ||||| ||| || ||||||||| || || | Sbjct 160899 TTTTTTC--TAATA-ATGTATTTCCATTTGTTTCTCCCCTTATAAACCATAATAACTCTT 160955 Query 59286 TAATG-CAAATTTTCCAAGCAACtttttttGTTGTAAGCATTGGAA 59330 |||| | | || ||| || |||||||||||| | | ||||| Sbjct 160956 CAATGATACCTCTTACAAATAA-TTTTTTTGTTGTTAATAATGGAA 161000 >seq7 Length=1224129 Score = 102 bits (112), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 430348 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 430293 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| || || Sbjct 430292 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTATGTAGTCCATATAATGCAGACTT 430233 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||||||| | |||||||||||| || Sbjct 430232 TGATGGAGATGAAATGAATTTACATGTACCTCAAACA 430196 >seq2 Length=1775135 Score = 95.1 bits (104), Expect = 3e-14 Identities = 172/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 305264 AAACAATTCAGTAAAAT-GCTTGAA-ATTAATGATATTGTTATCAGACATTTGAATGACA 305321 ||| ||||||| |||| ||||||| || || ||| || || ||| ||| ||| Sbjct 1412438 AAAAAATTCAGAAAAAGAGCTTGAATATGGAT-ATAAAGTAGAAAGGCATATGACTGATG 1412496 Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 | |||| | | || ||| | || ||||| | ||||||||| ||| |||| || | Sbjct 1412497 AAGATTATATATTATTTAATCGACAGCCATCCTTACATAAAATGAGTATTATGGGACACA 1412556 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 ||| ||| |||| || | || ||||| |||||| || || | | || |||| Sbjct 1412557 AAGCAAAAATATTGCCTTATTCTACCTTTCGTTTAAATTTAGCTGTAACTTCACCATATA 1412616 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGA 305501 |||| |||||||| || ||||||||||| ||||| || |||||||| | | |||| Sbjct 1412617 ATGCCGATTTTGACGGTGATGAAATGAACTTGCATTTAGCTCAATCACATGAAACAAGAT 1412676 Query 305502 CTGAATTA 305509 ||||| || Sbjct 1412677 CTGAAATA 1412684 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| |||||||||| |||| ||| | | || || | | Sbjct 1413772 ATAGATCATTACCACATTTTATTAAATTTGATTATGGACCAGAAAGTAGAGGGTTTGTGT 1413831 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 | | ||| |||||| || ||| | || ||| || |||||||| || | || Sbjct 1413832 CGAATTCTTATTTAAGT--GGGCTAACACCACAAGAAGTGTTTTTTCATGCTATGGGAGG 1413889 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 1413890 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 1413949 Query 306427 ATTAATGAAAACGCTTGAAGATATT 306451 |||||| ||| | | |||||| || Sbjct 1413950 ATTAATTAAAGCTATGGAAGATGTT 1413974 >seq5 Length=1553486 Score = 84.2 bits (92), Expect = 5e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 72240 ATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAATGCTTTA-ATA 72298 ||||| || ||| || |||||||||| | || ||| | | ||| |||| || Sbjct 747830 ATTTGTATTAGGGCCACTGTTAGCCATACTTAATAATCCTTCCTTATCATGTTTTATATC 747771 Query 72299 AGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCCATCAAAGT 72358 | ||||| ||||| |||||| ||||||||||||||||| || | || |||| | | Sbjct 747770 A-AAATTTTCATCATCAAAATTTTCTCCATATATACTTAAACTTCCACTCCCATTATGAT 747712 Query 72359 TCACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAAA 72408 | | || |||||| ||||| | |||||| | || || |||||||| ||| Sbjct 747711 TAATAAAATCACCACCTTGTATCATAAATTCTTTTATAACTCTATGAAAA 747662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811796401426