Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 138 7e-28 seq3 102 5e-17 >seq9 Length=1049758 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | | ||| || ||||||| || |||||||| ||||| ||||| || Sbjct 615371 ACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGA 615430 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || |||| ||||||||||||||||| ||||| || | || ||||| | || Sbjct 615431 TAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGG 615490 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || ||||| | || ||||| || | ||| || || ||| | Sbjct 615491 AATTCCTTCTTTATCTTGGATTTT-AGCTTTAACATTTTCAATGGTATCAGATGGTTCAA 615549 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || ||||| |||||||||||||| |||||| Sbjct 615550 CATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCATA 615599 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || ||||||| || |||||||||||||| ||||| || Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615202 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || |||||||||||||| |||||||| || | |||||||| | || Sbjct 615203 TAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 615262 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || ||||| || | || || || || | Sbjct 615263 GATACCTTCTTTATCTTGAATTTT-AGCTTTAACATTTTCAATAGTATCTGATGGCTCAA 615321 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || ||||| |||||||| || || |||||| Sbjct 615322 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATA 615371 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | ||| || || |||| ||| |||||||||||||| || || || Sbjct 615599 ACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGA 615658 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || || ||||||||||| || || || || | || ||||| | || Sbjct 615659 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGG 615718 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| || || ||||| || | || || || ||| | Sbjct 615719 GATACCTTCTTTATCTTGAATTTT-TGCTTTAACATTTTCAATAGTATCTGATGGTTCAA 615777 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || ||||| |||||||| || || |||||| Sbjct 615778 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATA 615827 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || ||||||| || |||||||||||||| ||||| || Sbjct 615827 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615886 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | | || || ||||||||||| |||||||| || | |||||||| | || Sbjct 615887 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGG 615946 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| || || ||||| || | ||| ||| || || | Sbjct 615947 GATACCTTCTTTATCTTGAATTTT-TGCTTTAACATTTTCAATGGTATCGGATGGCTCAA 616005 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 | |||| || || ||||| |||| Sbjct 616006 CATCAAGGGTTATAGTTTTTCCTG 616029 >seq3 Length=1741454 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||||| || |||||||| ||||| || || || | || | | || || Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| || ||||| || | || ||||| | || | |||||||| || Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || || ||||| ||| || || || ||| || |||| ||||| ||||| Sbjct 1503783 ATTTT-TGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| |||||||||||||| ||||| Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703735598720