Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 9e-16 seq3 84.2 2e-11 >seq9 Length=1049758 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATC 131970 ||||| || |||| | || |||||||| ||||| ||||| | | ||| | || | || Sbjct 615615 AAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCA-TC 615673 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||||| || | |||||| | |||||||| || || || ||||||||||| Sbjct 615674 TTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATC 615733 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||||||| ||| | | ||| | |||||| | || || || |||| || | || Sbjct 615734 TTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGT 615793 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || | ||||||| |||||| ||||| Sbjct 615794 TTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||||| | |||| |||||||| ||||| || || | || | |||| Sbjct 615159 AAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCT 615218 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | | |||| | || ||||| || || || ||||||||||| Sbjct 615219 TCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCT 615278 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | |||||| | ||||| || |||| || | ||| Sbjct 615279 TGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTT 615338 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || | ||||||| |||||| ||||| Sbjct 615339 TTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||||| | | || |||||||||||||| || || | || || ||| Sbjct 615387 AAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCT 615446 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| |||| | |||| | |||||||| ||||| || ||||||||||| Sbjct 615447 TCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCT 615506 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||| ||| | | ||| | ||||| | || || || || | || | ||| Sbjct 615507 TGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTT 615566 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | |||||||| || || ||||| Sbjct 615567 TTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 >seq3 Length=1741454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||||| | |||| |||||||||||||| ||||| | | | | | || | ||||| Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCA-TCTTC 1503721 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | |||| | |||||||| || || || ||||||||||| Sbjct 1503722 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1503781 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | || || || || | || | ||||| Sbjct 1503782 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||||||| || || ||||| Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610806795760