Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq9 170 2e-37 seq3 134 1e-26 >seq9 Length=1049758 Score = 170 bits (188), Expect = 2e-37 Identities = 185/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||||||||||||||| | ||||| |||| || || |||| | Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGA-GCCATC 615312 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| |||||| |||||||| ||||| || || ||||| Sbjct 615311 AGATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615252 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | |||| | || |||||| | ||||||| |||| | ||||| || Sbjct 615251 GCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAA 615192 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCATT 25413 || ||||||||||| ||| | |||||||| |||||||| |||||||| | |||||| Sbjct 615191 CATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGGTTGCTAATCATT 615132 Query 25414 CGA 25416 ||| Sbjct 615131 CGA 615129 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||||||||||||||| | ||||| |||| || ||| ||| | Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAA-CCATC 615768 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||||||| |||||||| ||||| || || ||||| Sbjct 615767 AGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615708 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | || || |||||| | ||||||| |||| | || || || Sbjct 615707 ACAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAA 615648 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | || ||||| |||||||| ||||| || Sbjct 615647 CATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGG 615600 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| ||||| |||||| | ||||| | || || ||| ||| | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAA-CCATC 615540 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| ||||| |||||||| || || || || ||||| Sbjct 615539 TGATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCA 615480 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| || ||| |||||| | ||||| | ||| | ||||| || Sbjct 615479 ACAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAA 615420 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| ||| | |||||||| |||||| | |||||||| Sbjct 615419 CATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGG 615372 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| | || || | || || || |||| | ||||| || || | || ||| ||| Sbjct 616027 GGAAAAACTATAACCCTTGATGTTGA-GCCATCCGATACCATTGAAAATGTTAAAGCAAA 615969 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| |||||||| ||||| || || |||||||||||| | |||| | || ||||| Sbjct 615968 AATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAACA 615909 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||||| |||| | ||||| || || ||||||||||| ||| | ||||| Sbjct 615908 ATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATTT 615849 Query 25381 AGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||| |||||||| Sbjct 615848 AGTTTTAAGATTAAGAGGAGG 615828 >seq3 Length=1741454 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | |||||||||||||||||||||||| | ||||| | || || ||| || Sbjct 1503874 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 1503816 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | ||||| || || | || ||| |||||| |||||||| || || || || || Sbjct 1503815 ATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 1503756 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| |||||| | |||| || || |||||| | ||||||| |||| | | || || Sbjct 1503755 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTA 1503696 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||||||||| ||| | ||||| || Sbjct 1503695 TAACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094032797120