Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq3 105 5e-18 >seq9 Length=1049758 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||||| || || || || || || | || || || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || |||||||| |||||| | ||| | ||||| ||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||||||||||| || |||||||||| || || ||| ||||||| Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGG 615144 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||||| || || || || || || | || ||||| Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||||| || |||||||| | || ||||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 615707 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | || || ||||||||||||||| | ||| | || || ||| Sbjct 615706 CAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAAC 615647 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||||||||||||||| |||| ||||| || || ||| |||| || Sbjct 615646 ATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGG 615600 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 106335 GTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTAT 106394 || ||| ||||||| || |||||||| | || |||||| ||||| | |||| | Sbjct 615979 GTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTT 615920 Query 106395 GCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCT 106454 || || ||||||||||||||| | ||| | ||||| ||||||||||||||||| Sbjct 615919 GCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCA 615860 Query 106455 ACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||| || || ||| ||||||| Sbjct 615859 ACCTTACATTTAGTTTTAAGATTAAGAGGAGG 615828 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| || ||||| || || || || | || ||||| Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| || |||||||| | || ||||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGATTACA 106437 ||||| | |||| || || |||||||| ||||| | || ||||| | |||| | Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTG--ATTATA 615421 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| ||||||||||| || |||||||||| || || || ||||||| Sbjct 615420 ACATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGG 615372 >seq3 Length=1741454 Score = 105 bits (116), Expect = 5e-18 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 106252 GTTTA--AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC 106309 ||||| ||||||||||| ||||| |||||||| || || || || || || | || Sbjct 1503881 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 1503822 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 ||||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 1503821 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 1503762 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 | |||||||||||| | |||| || || ||||||||||||||| | |||| | Sbjct 1503761 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATC 1503702 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| ||||||||||| || ||||||| ||| Sbjct 1503701 TGACTATAACATTCAAAAAGAATCAACCTTACATTTGGTA 1503662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329276376128