Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 3e-12 >seq1 Length=2452783 Score = 87.8 bits (96), Expect = 3e-12 Identities = 210/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 160968 TAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGG 161027 |||| | |||||| || || |||||||| || ||| | || || || | |||| | Sbjct 914411 TAATATTTGGTATCACAGGACAGGATGGGTCATATTTGAGCGAGCTACTTTTAGAGAAAG 914352 Query 161028 GGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATCGATC 161087 | |||||||| ||||| | ||| | || | ||||||||| |||||| |||| Sbjct 914351 GATATGAAGTTCATGGGGTGATTAGGAGGTGTAGTACATTTAATACAAAAAGAATAGATC 914292 Query 161088 ATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATAGTCT 161147 |||| || || | ||| | | || || || ||||| ||| || ||| | | Sbjct 914291 ATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATATTTT 914232 Query 161148 CTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGA 161207 || | || || || |||| |||| || || || ||| ||||| || ||||| | Sbjct 914231 CTTTAATATCTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGCCATGTAA 914172 Query 161208 AAGT-ATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGA 161266 |||| | |||| || |||||||||||||||||| | ||| | || || ||||| Sbjct 914171 AAGTGAGCTTT-GAACTACCTGAATATACAGCACAATGTACAGCTATTGGTACATTAAGA 914113 Query 161267 GTATTGGAGGCAGTT 161281 |||| || ||| || Sbjct 914112 ATATTAGAAGCAATT 914098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928997808080