Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 475 5e-129 seq2 255 8e-63 >seq9 Length=1049758 Score = 475 bits (526), Expect = 5e-129 Identities = 1004/1478 (68%), Gaps = 31/1478 (2%) Strand=Plus/Plus Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 ||||| ||||| ||||||||||| | |||||||||||||| | |||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || |||||||||||||| | | | | |||||| | ||||| | | ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTGT 68925 |||| | |||||||||| | | ||| ||||||| | ||| ||||| Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 | ||||| || ||||| || | ||||| |||||| ||||| | || ||| Sbjct 572882 AATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGTCCATTTACTTGTGCT 572941 Query 68986 AGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTG 69042 | ||| || || | ||||| ||| | ||||| || || || || || ||||| ||| Sbjct 572942 AACTCAACAGACATT--TCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATTT 572998 Query 69043 AGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 | |||| ||||| | || ||||||| |||||| ||||||| |||||| ||| Sbjct 572999 AATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 573058 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 || || || || || || ||||| |||||||| |||||||| ||||| |||||| ||| Sbjct 573059 CCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATT 573118 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG-TC 69221 || |||||||| | || |||||||||| | ||||| | || || ||| | | || Sbjct 573119 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATC 573177 Query 69222 CTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTAC 69275 | || ||| ||||| |||| | | |||| |||||| || | ||| | Sbjct 573178 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 573237 Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACA 69335 || |||||||||||||| ||||| |||| || || ||||| | || || ||| Sbjct 573238 TGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAACA 573297 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 || |||||||||||| || || || | ||||| |||||| || || || || || Sbjct 573298 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATC 573357 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 || || | ||| | || |||||||||||| ||| || | |||| ||| | Sbjct 573358 TTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 573417 Query 69456 GACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAG 69512 | ||| | || || || | | | || ||| ||| |||| |||||||| Sbjct 573418 ATCTTGTGCA---AGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATATAA 573474 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 ||| ||||| || |||||| ||| || || || |||||||| || ||||| || Sbjct 573475 TTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCACATTAA 573534 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 | ||| | || ||||| |||| ||||||||||| ||| || | ||||| ||| Sbjct 573535 AGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 573594 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||| | ||| | | ||| |||||| || || ||||||| | | ||| | ||| || Sbjct 573595 AAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTC 573654 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | |||||| || ||||||||||| | ||||| || | ||| || ||| || Sbjct 573655 AAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGCC 573714 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 || ||||||| ||||| || || | |||| | ||||| | ||| |||| | |||||| Sbjct 573715 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATT 573774 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG--CGCGAATATTACTAATAGAT 69870 ||| ||||||| ||||| ||||||| | ||| | | ||||| | || Sbjct 573775 TGATATACCATTAGTTCCTCTAATATAAGAA--TTTTGACCTCTAATATCTTGTACAGCA 573832 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | |||||| |||||||| ||||| |||| ||||| | || ||||| ||| ||||| Sbjct 573833 ACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAATATA 573892 Query 69931 CCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989 || ||||| |||| | |||| | ||| || ||| || ||||||||| | | Sbjct 573893 CCTTCTATCGAATCAGATTTCATCGATAATAA-AAAGCATGAAGACATTTGGGGCCTTGG 573951 Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||||||| |||||||||||| |||| || ||||| || |||||| ||| | | || Sbjct 573952 TGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATG 574011 Query 70050 GTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCA 70108 || ||||| | ||| ||| | ||| || | ||| |||||||| | || | ||| | Sbjct 574012 ATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTCATTA 574070 Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 | | ||| ||||| ||||| | |||||||||| || || | ||| ||| | || | Sbjct 574071 ATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTCTCTA 574130 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 |||||||| |||||||| | || ||| |||||| Sbjct 574131 ATGTTTTAAATCCAAAATAATCATAATTAAAATCTCTT 574168 >seq2 Length=1775135 Score = 255 bits (282), Expect = 8e-63 Identities = 617/920 (67%), Gaps = 23/920 (3%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GTGACATAACTCCCATTTT 39327 |||||| ||| | ||||||||| | || | ||||| | | |||||| || ||| Sbjct 183161 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTT 183220 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| || || |||| | || || || ||||||||||| |||| || ||||| || Sbjct 183221 TTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAGTC 183280 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA---TTCTGAAAT 39444 ||| || ||| ||||| ||| || | ||| | | ||||| |||| ||| Sbjct 183281 CATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCT--AAT 183338 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 |||| ||| ||||||||||| |||||| ||| | | |||||||||| || | Sbjct 183339 -AATCGATCAGCAACAAATTCGATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAA 183397 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | | |||| || || | ||| | |||| | || || || ||| | | ||| Sbjct 183398 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 183457 Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || | || ||||| || | || ||| || | ||||| || Sbjct 183458 --ATTCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATAAATTAAACAATTA 183515 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || |||| || ||||| |||||||||||||| ||| |||||| | || | Sbjct 183516 AAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGT 183575 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 | | | ||||||| | ||||||||| ||| |||||| | ||| ||| || || || Sbjct 183576 AATTTATTTTGCTTTTTAAACCAAAATATTGCA-CAAAAGCTTCCACTAAATAATATTCC 183634 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCA 39798 ||| || |||| || |||| ||| || | || |||||||||| |||||| Sbjct 183635 TTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATT---TATCCA 183691 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || |||||| ||||| || |||| || || |||| ||||||| ||| | Sbjct 183692 TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAA 183751 Query 39859 ATA-ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 || | | | | || | ||| |||| ||| |||| ||||| | |||||| |||| | Sbjct 183752 ATTTAACCTCTCCTTCTC-ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAG 183810 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 | || || ||||||| || || ||||| ||||| | | |||||| | ||||||| Sbjct 183811 AGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTA 183870 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 ||||| ||||| | ||||||||||| ||||||||||||||||| ||||||| Sbjct 183871 CCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAA 183930 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 |||| || |||||||| ||||||| |||||||| | ||||| | |||| || | Sbjct 183931 ATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCA 183990 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||| |||||| ||||| ||||||||| |||||||| || || || || ||||| || | Sbjct 183991 AATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAA 184050 Query 40158 TGTTCCATATATCACGATAT 40177 ||||||| ||| ||||| Sbjct 184051 AATTCCATACTTCAGGATAT 184070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908233300240