Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10 197 1e-45 seq2 176 4e-39 seq11 154 1e-32 >seq10 Length=780440 Score = 197 bits (218), Expect = 1e-45 Identities = 390/573 (68%), Gaps = 23/573 (4%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| || || ||| ||| ||||||||||| || ||| || | ||||| ||| | Sbjct 86839 TATGGTCCTCCTGGTACTGGTAAAACATTAATAGCTAGACAAATAGGTAAAACATTAAAT 86780 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | |||| |||||| | ||||| |||||||| ||||||||||||||||| ||| Sbjct 86779 GCAAGAGAACCG---AAAATTATTAATGGACCTGAAATATTAAATAAATATGTAGGGCAA 86723 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA--GAAGAACAAAAACGTTTAG 19534 || |||||||| | || ||| ||| || |||||| | || | ||| | | | Sbjct 86722 TCTGAAGAAAACATTCGTAATTTATTTAAAGAGGCTGAATTGGAGTATAAACAAGCT--- 86666 Query 19535 GGCGCAAAAGT--TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCA 19592 || | |||| | | || || ||||| ||| ||||||| | || ||||| ||| || Sbjct 86665 GGAG-AAAATTCATTATTACATATTATTATATTAGATGAGATAGATGCAATTTGTCGACA 86607 Query 19593 AAGAGGT---------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCT 19643 ||||||| ||| ||| || ||| |||| | | | || || ||| | | Sbjct 86606 AAGAGGTAGTGCTGCATCTAGTGGGTCAGGTGTAAATGATAGTATAGTTAACCAATTATT 86547 Query 19644 GTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAG 19703 |||||| |||| || || || | |||||||| || | ||||| ||||| ||||| Sbjct 86546 ATCAAAAATAGATGGAGTAAATAGCTTAAATAATATACTACTAATTGGTATGACAAATAG 86487 Query 19704 ACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAAT 19763 | | || ||||| || || |||||| |||| ||||| || ||| || | || ||||| Sbjct 86486 AATAGATTTAATTGATGAAGCATTATTAAGACCAGGTCGATTTGAATTACATATTGAAAT 86427 Query 19764 TAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCG 19823 ||||| || || || | | |||| ||||| || ||||| || ||| | Sbjct 86426 ATCATTACCAAATAAAGAAGGTAGAATTCAAATATTAAATATTCATACGAAAAATATGAG 86367 Query 19824 ACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAA 19883 ||||||||| |||||| | ||||| || |||||||| | |||| || ||| Sbjct 86366 ACAAAATAATAAATTAAATAAAGATGTTAATATAGAAGAATTAGCAGAAAAAACTCCAAA 86307 Query 19884 CTATAGCGGCGCAGAACTTGAGGGATTAGTGAG 19916 || | || |||||| |||| |||||||| || Sbjct 86306 CTTTTCAGGTGCAGAAATTGAAGGATTAGTAAG 86274 >seq2 Length=1775135 Score = 176 bits (194), Expect = 4e-39 Identities = 385/575 (67%), Gaps = 4/575 (1%) Strand=Plus/Minus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||| ||| ||||| ||| ||||| | | || |||||||| | || ||||||||||| Sbjct 184079 TCCTATTATATATCCTGAAGTATGGAATTTTTATAAAAAAGCTGAAGCCTCATTTTGGAC 184020 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAA 43828 || |||||| | ||||| | | || || | || ||| | |||||| | | Sbjct 184019 TGCTGAAGAAATAGATTTATCAAGTGATTTGAAAGACTTTGAAAA--ATTAAATGTAAAT 183962 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 ||||||||||||||| || || || |||||||| || || || || ||||| Sbjct 183961 GAAAAACATTTTATAAAACATGTGTTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTA 183902 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||||||| |||| ||| ||| || ||| || ||||| | |||||| Sbjct 183901 GAAAATTTGGCTAGTAAATTTTTAAGAGAGGTACAAATAATTGAAGCTAAAAAGTTTTAT 183842 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 |||||||| || | |||||||| || || |||| || ||| | | || |||| Sbjct 183841 TCTTTTCAAATAGCTGTTGAAAATATACACTCTGAAACATATAGTTTATTAATTGATAAT 183782 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCG 44068 || || || |||| | | |||| | || ||| |||| || |||| |||| || Sbjct 183781 TATATTAAGGATGAGAAGGAGAGGTTAAATTTATTTCATGCTATTGAAAATATACCAGCA 183722 Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAA 44128 || ||| |||||||| ||||| ||||||||||||| | ||||||||| ||| Sbjct 183721 ATAAAAAATAAAGCATTATGGGCAGCTAAATGGATAAATGATACAAATTCTTTTGCTGAA 183662 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || |||| || |||| ||| ||||| || || ||| ||| ||| || ||| Sbjct 183661 AGAATTGTAGCTAATGCATGTGTCGAAGGAATATTATTTAGTGGAAGCTTTTGTGCAATA 183602 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 |||||||| || || | | | | | || || || ||| ||||| ||||| ||| Sbjct 183601 TTTTGGTTTAAAAAGCAAAATAAATTACACGGTTTAACATTTAGTAATGAATTAATTAGT 183542 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 | |||||||| ||||| |||||| ||| || Sbjct 183541 AGGGATGAAGGATTACACACAGATTTTAATTGTTT 183507 >seq11 Length=775211 Score = 154 bits (170), Expect = 1e-32 Identities = 274/397 (69%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 40868 TGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA-CTA 40926 |||||| || || ||||||||||||| | | |||| ||||| || ||||| ||| || Sbjct 160825 TGATCTAGGCCCAATTTATGGATTTCAATGGAGACACTTTGGTGCTGAATAT-ACAGATA 160767 Query 40927 TGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTA 40986 || | ||||||||| ||||||| | ||||| ||| | |||| || |||| Sbjct 160766 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATTTAATTA 160707 Query 40987 AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATT 41046 || |||||| | | || || || ||||| || ||||| || || || || Sbjct 160706 AAAACGATCCAACATGTAGGCGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATA 160647 Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| || ||||||||| | |||||||| ||||| |||| |||| || | | Sbjct 160646 AAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTAT 160587 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 ||||| |||||||| |||| |||| | || || || || || ||||| || || Sbjct 160586 CATGTATTATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCATTTAATATTGCTT 160527 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTG 41226 ||| || | | || |||||||| ||||| || |||||| |||| | ||||||| Sbjct 160526 CCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTA 160467 Query 41227 TTCACACGTTAGGAGATGGACATATTTACATTAATCA 41263 | || || ||| ||| ||| |||| | |||||| Sbjct 160466 TACATGTATTGGGAAATGCTCATGTTTATAATAATCA 160430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455680296330