Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 seq3 104 2e-17 >seq9 Length=1049758 Score = 116 bits (128), Expect = 3e-21 Identities = 784/1245 (63%), Gaps = 38/1245 (3%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || || || ||| | || | || |||||||| || | || |||| | ||| || ||| Sbjct 572465 TGGTCGATGAAAACACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 572524 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 ||| | || || || | || | | || | ||||| ||| ||||||| || Sbjct 572525 CAAACTGTTTTATACAATTCTTTCAAGTCGCTAGGTATTTCACTAATATATTGAACACTT 572584 Query 130676 CCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAAG 130734 || || | ||| || | || |||| |||| || ||| | | || | | ||| Sbjct 572585 CCATTATGGGCAATTAATT-GTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAAAAG 572643 Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||||| ||||||| ||| | | || |||||| | || ||||| || Sbjct 572644 ATCTTTTAACAAATGAGGATTGACAACAAAGAATTCACCACTTAAAACACGTCTGTAATA 572703 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 |||||| || || | |||||||||||||| || || || || ||||||| || | || Sbjct 572704 AATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGC 572763 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| ||| | | |||||||| | | || ||| | | |||||| || Sbjct 572764 TGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTT 572823 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATTG 130971 ||| |||||||||||| | | || | || || ||||||||||||||||| Sbjct 572824 TAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 572880 Query 130972 TAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGC 131031 || ||| ||||| || || ||||| || | ||||| || ||| | || | || Sbjct 572881 TAATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGTCCATTTACTTGTGC 572940 Query 131032 CAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAA 131091 | || ||| ||||| | ||||| || || || ||| | ||||||| Sbjct 572941 TAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCTATTTAA 573000 Query 131092 TTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACC 131151 || ||| |||| | || || ||| || | | | ||||| | ||||| | || Sbjct 573001 TTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 573060 Query 131152 CTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACAT-TTACGCGAACATTCGGTGG 131210 |||| || | || | || |||||| || ||| || || || | || ||| Sbjct 573061 TTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATTGG 573120 Query 131211 GATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTT 131270 | ||| || | ||||| ||||| | |||||| | | ||||| || | | Sbjct 573121 G-TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 573179 Query 131271 TCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTG 131330 ||||| | |||| ||| |||| | ||||||| | || |||| Sbjct 573180 ATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTG 573239 Query 131331 ACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGCGCA 131388 | || ||||||||||| || ||| ||| | || ||| | ||||||||| || Sbjct 573240 AAGCTAGATTACAAACAGCTACTTCATCAGGTGAT--GTATATTCAACAATTTCACAACA 573297 Query 131389 CAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GT 131447 |||||||| | || || || || ||||||| |||||| ||||| ||| |||| | Sbjct 573298 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-GCATGCAT 573356 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--A 131505 | || || | ||| || || || ||||| | |||| ||| |||| || | || | Sbjct 573357 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTT--GTAATATAGCAAACCA 573414 Query 131506 GAGTTTTCGAGCAGACAATTGATATTTGT-----ATTGGCCGCGTTTTTCGTAATTTTCG 131560 | | | | ||| | || || | ||| | ||| | || |||||| ||| Sbjct 573415 TAAATCTTGTGCA-AGAACTGTTTTTTTTCCCAAATTTTCTGC----TTCGTATTTTGTA 573469 Query 131561 TACAACGTTTCAAAGTTTTGGCCAAACGA-ACTGTCCAAATTGGGACATTCGCTGGGACA 131619 || || ||||||| | || || | || | | || |||| ||||| | || || Sbjct 573470 TATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGG-CATTCATTAGGGCA 573528 Query 131620 CATTAGCGACCACACGCCGTTCTGTTC---AACTCGCTTCATAAACAAATCCGGCACCCA 131676 ||||| | ||| | || | ||| |||| |||||||| ||||| || ||||| Sbjct 573529 CATTAAAGTCCA---GTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCA 573585 Query 131677 TAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATT 131736 | || || || | ||| | |||| | |||||| |||| | ||||| | |||| Sbjct 573586 AATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATC 573645 Query 131737 TAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 |||||| || ||||| || | ||||| ||||| | ||| || || Sbjct 573646 TAAAAATTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGC 573690 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| || || ||||||||||| || || || | | |||| || |||| Sbjct 615387 AAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTT-CGGCCGTC 615445 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| |||||| |||| | | |||||||| || || | || |||||||| Sbjct 615446 TTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 615505 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | |||| | || || | | |||||| || ||||| || | Sbjct 615506 TTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGT 615565 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || | |||||| ||||||||||||||| Sbjct 615566 TTTTCCAGTTAAAGTTTTTACAAAGATTTGCATA 615599 >seq3 Length=1741454 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || ||||||||||| || ||||| | | | ||| || | |||| Sbjct 1503662 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGC-CATCTT 1503720 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || ||| |||| | | |||||||| || || | || |||||||| Sbjct 1503721 CTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 1503780 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||| | |||| | || || | | |||||| || ||||| || | || Sbjct 1503781 GGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1503840 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1503841 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934058193392