Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 170 2e-37 >seq9 Length=1049758 Score = 170 bits (188), Expect = 2e-37 Identities = 823/1292 (64%), Gaps = 20/1292 (2%) Strand=Plus/Minus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| || || ||||| | || ||| | || |||||||| ||||||||||| ||||| Sbjct 573985 TCATGCTACTCCAACATTATTTAATTCGGGAACACCAAGGCCCCAAATGTCTTCATGCTT 573926 Query 104380 CCT--TATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 104437 | ||||| | || || || || | ||||| | || ||| | | | | ||| Sbjct 573925 TTTATTATCG--ATGAAATCTGATTCGATAGAAGGTATATTTGAAACATTAAAGCAATGT 573868 Query 104438 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAA 104496 || ||| || || || ||||| || | ||| | || ||| | |||| | Sbjct 573867 GCATTAATTAGTAAAACAGCAGGAGGTATAGGTGTTGCTG-TACAAGATATTAGAGGTCA 573809 Query 104497 TAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 104556 || ||| |||| | || || |||||| |||| ||||| | |||||||| | | || Sbjct 573808 AAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTAGTTCCAATGTTAAGAGT 573749 Query 104557 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGC 104613 ||||| | ||||| | |||||| |||||| ||| | ||||||| ||| | || Sbjct 573748 TTTTAATGATACAGCAAGATATGTAGATCAAGGTGGCGGAAAAAGAAAGGGTTCTTTTGC 573689 Query 104614 AGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA 104673 || ||| |||| ||||||||| | ||||| | || || | || || | || || Sbjct 573688 TGTATATATTGAACCATGGCACTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCA 573629 Query 104674 AGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 ||| | || || | | || ||| | || | ||| | ||| | || ||| | || Sbjct 573628 CGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATT 573569 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTG 104792 ||||| ||||| |||| | | || ||| || | | || || | || || || | Sbjct 573568 TATGAAAAGAGTAAAGGAAAATAAAAACTGGACTTTAATGTGCCCTAATGAATGC-CCAG 573510 Query 104793 GTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAG 104852 || | || | |||||| || |||||| | || ||||| ||||| | |||| Sbjct 573509 GTTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAAGCAGAAA 573450 Query 104853 GTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAA 104912 | || | || || | || ||| | ||| ||||| | | ||||| Sbjct 573449 ATTTGGGAAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGTCAAA 573390 Query 104913 CCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAA 104972 || |||||| |||||| ||| | || ||||| || || || || |||||||| Sbjct 573389 TTGAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAATCAAA 573330 Query 104973 AGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACA 105032 | ||||| || || || || ||| | ||| ||||| | |||| |||| Sbjct 573329 AAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATTGTTGAATATACATCAC 573270 Query 105033 AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG 105092 ||||| ||||| ||||| || || ||||| || | || | ||| ||| || Sbjct 573269 CTGATGAAGTAGCTGTTTGTAATCTAGCTTCAATTGCATTATGTAAATTTGTTGATAGAG 573210 Query 105093 AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACC 105152 | | ||| |||| ||| | ||||| | | || |||| |||| | | || | ||| Sbjct 573209 AAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATT 573150 Query 105153 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA-ATCTAATATG 105211 || | | | ||||||| ||||||| |||||| || | || || || ||| |||| Sbjct 573149 TAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGC-CGAAAGATCAAATAAA 573091 Query 105212 AGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGC 105271 ||||| | || ||||| | || || || || | || ||| ||| || |||| | Sbjct 573090 AGACATAGGCCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGA 573031 Query 105272 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTAT 105331 | ||| ||| || || ||||| || ||| | ||| | ||||||||||| |||||| Sbjct 573030 TATCCATATGAATCTGATGAAGCTAAAGAATTAAATAGAAGAATATTTGAGACTATGTAT 572971 Query 105332 CACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 | || ||| | || | | ||||| ||| | || |||| ||||||||| | | | Sbjct 572970 TATGCTGCTTTAGAAATGTCTGTTGAGTTAGCACAAGTAAATGGACCATATGAATCATAT 572911 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-A 105450 | ||| |||||| |||| | | ||||||||||||| |||| | | | | | Sbjct 572910 CAAGGTAGTCCAGCAAGCAAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGA 572852 Query 105451 GCTTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGA-GAAGGGTCTTCGTA 105506 | | || || |||| | | | || || | ||| | | | || | | | Sbjct 572851 TAATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTATGCATGGATTAAGAA 572793 Query 105507 ACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 105566 | ||| || | || || ||||||||||| || || ||||||| || || ||||||| Sbjct 572792 ATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGGAAATAATG 572733 Query 105567 AATGCTTTGAACCCTACACGACGAACATCTAT 105598 ||| ||||||||| || || | ||||| ||| Sbjct 572732 AATCCTTTGAACCATATACAAGTAACATTTAT 572701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260318809840