Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 >seq11 Length=775211 Score = 116 bits (128), Expect = 3e-21 Identities = 271/400 (68%), Gaps = 13/400 (3%) Strand=Plus/Plus Query 111721 TGATTTAAATAAACATGCGCATCTCCTA-TACAATGGATCAATTCCCAAGGCTCCAAACC 111779 ||||| ||||||||| |||| ||| | |||| || || ||||| || | ||| Sbjct 160430 TGATTATTATAAACATGAGCATTTCCCAATACA-TGTATAAATTCAGCTGGTTGTAAATT 160488 Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 | | ||||| ||||| ||||| | || | || |||||| |||||||| ||||| Sbjct 160489 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTAAATGGAACACC 160548 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 || || | ||| | |||| |||||| | |||||||| ||| | | ||||| Sbjct 160549 AAGCCCTAAATCACAAGATCGTTGATACATAATACATGATAATTTTCCATCAAAAACATA 160608 Query 111900 AAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCA 111956 ||||||||| | | |||||||||||| |||||||| || | | | | ||| Sbjct 160609 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTTATCTAAATCTTTTACATTCCA 160668 Query 111957 TGCACACATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCA 112015 |||||||| || || | || | ||| | ||| | || ||| | || | ||| Sbjct 160669 TGCACACAAAATAATTCGCCTACATGTTG-GATCGTTTTTAATTAAATTGATAATATTTT 160727 Query 112016 AGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTT--GCCC 112072 | ||| || | |||||| | ||||||| || || | ||| ||||| || || | Sbjct 160728 TTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATC---TGTATATTCAGCAC 160784 Query 112073 CATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 || ||||||||||||| ||||||||||| || || ||||| Sbjct 160785 CAAAGTGTCTCCATTGAAATCCATAAATTGGGCCTAGATC 160824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391945284728758