Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq2 125 3e-24 >seq2 Length=1775135 Score = 125 bits (138), Expect = 3e-24 Identities = 332/502 (66%), Gaps = 9/502 (2%) Strand=Plus/Plus Query 64890 ATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAA 64949 |||| || || || || | | ||||||| |||||| | ||||||| |||| |||| Sbjct 1130479 ATCCAGTTCCTATTCCTTCACACCCATTTACTAAAATTGTAGGAATAACTGGTATATAAT 1130538 Query 64950 AGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTT 65009 | || || | | | || || |||| ||||| || ||||| | |||||| || Sbjct 1130539 ATTGTGGTTCGATTTTTTGCCCTTCTTCATTTAAATATTTTAAAATTGGATCATCAAATT 1130598 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCAA-TTGAGTATAAATATATCT---TTCGGAT 65065 ||||||| | ||| | | || ||| || ||| | ||||| || | | ||| Sbjct 1130599 CATTAAATATACTTCTAGT-AGATGATGCAAGTTTTGTAAATATATACCTAGCTGCTGAT 1130657 Query 65066 GCGTGGTCTTGTCCAGTTCGT--CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAA 65123 || | ||| | ||| | | | ||||| || ||| || ||| || || | Sbjct 1130658 GCATC--CTTACCACCTTCTTTTCTACTACCAAATTGTCCACAAGGTTCTAAAAAGTTTA 1130715 Query 65124 TATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTT 65183 ||||||||||||||| ||| | |||||||| ||||| | | | ||| | || Sbjct 1130716 TATTGTTTGAACCAACAAATGTTTGAGCCATGTTTATAATAGTTTGTTGTAATGATGATT 1130775 Query 65184 CACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTT 65243 |||| ||||||||| | |||||| | | ||| || || |||||||||||| || Sbjct 1130776 CACCATGATGATATGCACTATGTTCTGCAATATAACCTACAAGTTGAGCAACTTTACATT 1130835 Query 65244 CCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATC 65303 | || ||||||| ||||||| | ||| || | ||| | | | | |||| ||| Sbjct 1130836 CGTTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGCCCAGGTTTCCATC 1130895 Query 65304 CATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTT 65363 ||||||| | ||| || || ||||| || ||||||| | || ||| ||| ||||||| Sbjct 1130896 CATCCATAATATTGGGTATACTTCTTTCTGTATCATATCTAGAATAATATATTAATTCTT 1130955 Query 65364 TGTTAATAAATTCTTCATATGA 65385 | || | ||| || | |||||| Sbjct 1130956 TATTTACAAAATCATAATATGA 1130977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235679810424900