Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq3 122 1e-22 >seq9 Length=1049758 Score = 125 bits (138), Expect = 8e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || || || || || |||||||| ||||| || | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || |||||||| || || || || ||||||||||| || || Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||| || || || ||| | || || | || || ||| | || ||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAAC 615419 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || | ||| |||| || Sbjct 615418 ATTCAAAAAGAATCGACCTTACATTTAGTTTT 615387 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | ||||| || || || ||||| || |||||| || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| || || || || || || || || ||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||||||||| || ||| | || |||| | || ||| | || ||||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || | ||| |||| || Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTT 615159 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||| | || || ||||| || ||||| |||||| || |||| ||||| |||| | || Sbjct 616033 CTTTCAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAA 615974 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || |||||||| || || || || || ||||| || ||||| | ||||||||||||| Sbjct 615973 GCAAAAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGA 615914 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||| | || |||| | || || | || ||||| | ||||| ||||| || | Sbjct 615913 AAACAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTA 615854 Query 27607 CATCTAGTCTT 27617 ||| |||| || Sbjct 615853 CATTTAGTTTT 615843 >seq3 Length=1741454 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27398 TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||| | ||||||||||||||| || || | ||||| || || || |||||||| |||| Sbjct 1503879 TTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTG 1503820 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | || ||||| |||| |||| | || || ||||| || || || || |||||||| | Sbjct 1503819 AACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCC 1503760 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 | || || || | ||||||| ||||| || ||| | || |||| | || || | | Sbjct 1503759 CTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTG 1503700 Query 27578 ACTATAATGTCCAAAAGGAATCCAC 27602 ||||||| | ||||| ||||| || Sbjct 1503699 ACTATAACATTCAAAAAGAATCAAC 1503675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309929493920