Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9 102 5e-17 seq3 89.7 3e-13 >seq9 Length=1049758 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || ||||| | || || ||||||||||||||||| || Sbjct 615372 CCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAT 615431 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| ||||||| | |||||| ||||| || ||||| | ||||| || || || Sbjct 615432 AGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGA 615491 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| ||| | |||||| | ||| || || || || Sbjct 615492 ATTCCTTCTTTATCTTGGAT-TTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAAC 615550 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 615551 ATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 91.5 bits (100), Expect = 9e-14 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||| ||||||||||| || ||||||| | ||||| | |||||| || ||||| Sbjct 615180 TCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAA 615239 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | || || || || || | || || || ||| ||| ||| | |||||| Sbjct 615240 ATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCT-TGAATTTTAGCTTTAACATT 615298 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || ||| ||| || || | || || ||||| |||||||| ||||| || Sbjct 615299 TTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTAC 615358 Query 34695 AAAAATCTGCAT 34706 ||||| ||||| Sbjct 615359 GAAAATTTGCAT 615370 >seq3 Length=1741454 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || || |||||||||||||| || || | |||| | ||||| Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || || || ||||| | ||||| || || || | ||| || || ||| | Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||||| |||||| | |||||| || || || || | || || ||||| Sbjct 1503783 AT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||||||| ||||| ||||| || ||||| || Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1503874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729346839378