Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 161 9e-35 seq3 143 2e-29 >seq9 Length=1049758 Score = 161 bits (178), Expect = 9e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||| | || || || | || |||||||| || ||||| || Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| ||||| |||||||| || || || |||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | |||||| ||||||||||||||| | || | || ||||| ||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAAC 615419 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| || |||||||||||||| ||||| Sbjct 615418 ATTCAAAAAGAATCGACCTTACATTTAGTTTT 615387 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| | ||||| || | || ||||| || || || || || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||||||||| | || | || ||||| ||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || ||||||||||| ||||| Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTT 615159 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| | ||||| || | || ||||| || || ||||| || Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||| |||||||| || ||||| |||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 615707 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | ||| || |||||||| ||||| | || | || || || ||| Sbjct 615706 CAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAAC 615647 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || ||||| || ||||| | || | ||||| || Sbjct 615646 ATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGGTAT 615597 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| || ||||| || || || ||||| | ||||| | || ||| ||||||||||| Sbjct 616020 CTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCAAAAATTCAAG 615961 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 | |||||||| || || || ||||| || | ||||| | || || |||||||| |||| Sbjct 615960 ATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAACAATTAGAAG 615901 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 | | || | || ||||| ||||| ||||| || || ||||||||||| ||||| Sbjct 615900 ATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATTTAGTTTT 615843 >seq3 Length=1741454 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | ||||| || | || |||||||| || ||||| || Sbjct 1503871 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCT 1503812 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||| ||||| |||||||| || || || |||||| Sbjct 1503811 GATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 1503752 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | ||| || |||||||| ||||| | || | || || || ||| Sbjct 1503751 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATAAC 1503692 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| || || |||||||||||||| Sbjct 1503691 ATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918041192320