Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 2e-15 >seq9 Length=1049758 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| || || ||||||| ||| | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || |||||||| |||| || | Sbjct 615538 GATACCATTGAAAAT--GTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATC 615481 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | |||||||| ||||||||||||||||| |||| || | | || ||||| | Sbjct 615480 AACAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATA 615421 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| |||||||| || || ||||| ||||| Sbjct 615420 ACATTCAAAAAGAATCGACCTTACATTTAGTTTT 615387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| || ||||| | || || ||| || || | ||||| || | || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| || ||||||||| | || || | Sbjct 615310 GATACTATTGAAAAT--GTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATC 615253 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | ||||||||||| |||||||||||||| || | | | | | || ||||| | Sbjct 615252 AGCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATA 615193 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| |||||||| || || ||||| ||||| Sbjct 615192 ACATACAAAAAGAATCAACCTTACATTTAGTTTT 615159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862113753182