Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9 141 2e-28 >seq9 Length=1049758 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || | || | || || |||||||| ||||||||||| | || || | Sbjct 615381 AGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGG 615440 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||| || || || ||||| || | | |||||| |||||||||| |||||| Sbjct 615441 CCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCT 615500 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || ||||| || ||| || ||||| ||||| ||||| |||||| || |||||| Sbjct 615501 TTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTG 615560 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || | ||| |||||||| | ||||| Sbjct 615561 ATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | ||| || |||||||| |||||||| || | | || || || Sbjct 615611 TCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCC 615670 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || |||||||| | | |||||| ||||| || | ||||| || Sbjct 615671 ATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTT 615730 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || ||| ||| || ||||| || || || || |||||| ||||||||||| Sbjct 615731 ATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGAT 615790 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || | || ||||| || | ||||| Sbjct 615791 TGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| ||||||||||| | || || ||||||||||||| || || || Sbjct 615174 GTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCA 615233 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | ||| || ||||| || | ||||| || || || || || ||| Sbjct 615234 GCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 615293 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || || || || ||||| ||||||||||| || ||||| || | || Sbjct 615294 ACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTT 615353 Query 211098 TTTACAAACACCTGCAT 211114 ||||| || | ||||| Sbjct 615354 TTTACGAAAATTTGCAT 615370 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| ||||||||||| | | || ||||||||||| | || || || Sbjct 615858 GTTGATTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 615917 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | ||| || |||||||| | ||||| || || || || ||| ||| Sbjct 615918 GCAAAAATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTATCTTGAATTTTTGCTTTA 615977 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || ||||| ||||| || || ||||| || || || || || ||||| Sbjct 615978 ACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTTTTTCC 616027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151019792090