Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 132 1e-25 seq3 131 4e-25 seq15 87.8 4e-12 >seq9 Length=1049758 Score = 132 bits (146), Expect = 1e-25 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| ||||||||||| | || || || | || ||||| |||||||||| || Sbjct 615623 GTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTG 615682 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||||||||| | || |||||| || || || |||||||| || ||||| || || Sbjct 615683 TTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TT 615741 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 |||| || ||| ||| || || ||||| | ||| || || | ||||| || || || | Sbjct 615742 TTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTTCCGG 615801 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||||| ||| | |||||| Sbjct 615802 TTAATGTTTTTACGAAAATTTGCAT 615826 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || ||||| | | |||| || ||||| | || || || Sbjct 615402 GTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCCAATTGTTTTCCG 615461 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || |||||| || || ||||| ||||| || |||||||| ||| || || Sbjct 615462 GCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGGAT-TTTAGCTTT 615520 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| ||||| || || | ||| || || | ||||| || || || || ||||| Sbjct 615521 AACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTTAAAGT 615580 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 615581 TTTTACAAAGATTTGCAT 615598 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || ||||| | | ||||| |||||||| | || || ||| Sbjct 615174 GTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCA 615233 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||| || || || || |||||||| || ||||| || ||| || || Sbjct 615234 GCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TTTAGCTTT 615292 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || ||||| | || || || | ||||| || || || || || || Sbjct 615293 AACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGT 615352 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | |||||| Sbjct 615353 TTTTACGAAAATTTGCAT 615370 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || ||||| | || ||||| |||||||||| || || ||| Sbjct 615858 GTTGATTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 615917 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||| || || || || |||||||| || ||||| || |||||| || Sbjct 615918 GCAAAAATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTATCTTGAAT-TTTTGCTTT 615976 Query 225636 CACAGCTTCGATGGTGTCTGA 225656 ||| ||| ||||| || || Sbjct 615977 AACATTTTCAATGGTATCGGA 615997 >seq3 Length=1741454 Score = 131 bits (144), Expect = 4e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | |||||||| |||||||||| || || ||| Sbjct 1503675 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1503734 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || |||||| || || ||||| ||||| || |||||||| |||||| || Sbjct 1503735 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGAT-TTTTGCTTT 1503793 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | ||||| || || || || || || Sbjct 1503794 AACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1503853 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||||| || | ||||||||| Sbjct 1503854 TTTTACAAAGATTTGCATTTT 1503874 >seq15 Length=364150 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 ||||| |||||||||||||| || |||||||| ||||| ||||||||||| |||||| Sbjct 124973 AATATCTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCAGACACATCATTA 125032 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561 | |||||| | ||||||||| || |||| Sbjct 125033 TTTAATGTTTCAATAACAGGTAATGCAGTTA 125063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530191565804