Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 217 1e-51 >seq2 Length=1775135 Score = 217 bits (240), Expect = 1e-51 Identities = 583/875 (67%), Gaps = 25/875 (3%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| ||||||| || || | |||| |||||| |||||||||||||| |||| ||| Sbjct 183209 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAA 183268 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| || ||| ||||| ||| | | || ||| ||| || Sbjct 183269 AGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAA 183328 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| ||||| |||||||| || || || ||| ||| | || || Sbjct 183329 ACATTCTAATAATCGATCAGCAACAAATTCGATGTATTGAGACATAAGTCTTGAATTCAT 183388 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 183389 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 183443 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| | | |||| | | ||||||| |||| | | | | Sbjct 183444 GCTTCTTTAACTATATTCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATAA 183503 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| |||||| || || ||||| || || ||||| | ||| ||| ||| Sbjct 183504 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAAT 183563 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| ||| | | | | | |||||||| ||||||||| || ||| ||| | Sbjct 183564 GTTAAACCGTGTAATTTATTTTGCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTA 183623 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| ||||| || ||| ||||| | || | || || | | | Sbjct 183624 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTG---TA 183680 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATAT 4780 || || |||||||| |||||| ||||| ||| ||| || || || | | || Sbjct 183681 TCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCT-GGTATATTTTCAAT 183739 Query 4781 AGCGTTAAATAATTT--ACTTTT--TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 ||| | |||||| || || | | ||| || ||| ||||||| | || |||| || Sbjct 183740 AGCATGAAATAAATTTAACCTCTCCTTCTCATC---CTT-AATATAATTATCAATTAATA 183795 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 ||||| ||||||| ||||||||||| | ||| || ||||| ||||| | ||| Sbjct 183796 AACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAG 183855 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCG 4955 |||| ||| ||| || || | ||||| || ||| | || ||||| |||||| || Sbjct 183856 CTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCA 183914 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| ||||||||||| || || ||||| |||||| | | ||| | || | | Sbjct 183915 TCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAAT 183974 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 |||| ||| |||||| | | |||||| | ||||||| |||||||||| || ||| Sbjct 183975 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCT 184034 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 || |||||||| || | | ||| | |||||||| Sbjct 184035 TCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 184069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049256491978