Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 484 9e-132 seq2 230 3e-55 >seq9 Length=1049758 Score = 484 bits (536), Expect = 9e-132 Identities = 1003/1476 (68%), Gaps = 29/1476 (2%) Strand=Plus/Plus Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||| ||||| ||||||||||| | |||||||| ||||| |||||||| | ||| ||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || |||||||||||||| | | | | |||||| | ||||| | || ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTATTGT 77333 |||| | | |||||||||| | | ||| ||| ||| | ||| ||||| Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 | ||||| || || || || | ||||| |||||| ||||| | | || ||| Sbjct 572882 AATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGTCCATTTACTTGTGCT 572941 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAG 77452 | ||| | | ||| || || | ||||| || || || || || ||||| ||| | Sbjct 572942 AACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATTTAA 573000 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| |||||| | ||| | ||||| |||||| ||||| | |||||||||||| Sbjct 573001 TTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 573060 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 || ||||| || |||||||| |||||||| ||||| || ||| |||||| ||| || Sbjct 573061 TTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATTGG 573120 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 |||||||| | || |||||||||| | ||||||| || | |||| | || | Sbjct 573121 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATA 573180 Query 77633 TAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGA 77686 || ||| ||||| ||| | || ||||| |||||| | || || || || Sbjct 573181 TAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGA 573240 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 |||||||||||||| ||||| |||| || | ||||| | || || ||||| Sbjct 573241 AGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAACATAA 573300 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||||||||| || || || | ||||| ||| || || |||||||| || || Sbjct 573301 ATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTT 573360 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||| | ||| | || || |||||||| || || | |||| ||| | | Sbjct 573361 ATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA--AA 573418 Query 77867 TCTAGCTTTTATCATAGATTTGTATCGC---CTCTCTCTTTCATATTGAGTATATAGCCG 77923 ||| | | | | | ||| | || | | ||| ||| |||| ||||||| Sbjct 573419 TCTTG-TGCAAGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATATAATTT 573477 Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| || |||||| ||| || || ||||||||||| |||||||| || | Sbjct 573478 TTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCACATTAAAGT 573537 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||||| || |||||| |||| ||||||||| | |||||||| ||| | |||| ||| Sbjct 573538 CCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAA 573597 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 || ||| || | ||| |||||| || || ||| ||| | | ||| | ||| || | Sbjct 573598 TAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAA 573657 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 |||||| || ||||||||||| | ||||| || | | || || ||| || || Sbjct 573658 AATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGCCACC 573717 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 ||||||| |||||| || || | |||| ||||||| |||||||||| | ||| || || Sbjct 573718 TTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGA 573777 Query 78224 TGTTCCATTTGTTCCAGAAATAT---AACTTCCACTTGCGCGAATAT-TACTAATGGATA 78279 | | ||||| ||||| ||||| || || || | | ||||| | || | | | Sbjct 573778 TATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCTTGTACAGCA-A 573833 Query 78280 TCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 ||||| |||||||| | ||| |||| || || | || ||||| || | |||| Sbjct 573834 CACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAATATAC 573893 Query 78340 CCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 | ||||| ||| |||| | ||| || ||| || ||||||||| | Sbjct 573894 CTTCTATCGAATCAGATTTCATCGATAATAA-AAAGCATGAAGACATTTGGGGCCTTGGT 573952 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | |||||||||||| |||| ||||| ||||| |||||| ||| | || || Sbjct 573953 GTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGA 574012 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || ||||| | ||| ||| | || || | ||| ||||||| | ||| | ||| || Sbjct 574013 TAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTCATTAA 574071 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 | ||| ||||| | ||||| | |||||||| || || ||||| ||| | || || Sbjct 574072 TAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTCTCTAA 574131 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 |||||||| |||||||| | || ||| ||||| Sbjct 574132 TGTTTTAAATCCAAAATAATCATAATTAAAATCTCT 574167 >seq2 Length=1775135 Score = 230 bits (254), Expect = 3e-55 Identities = 394/563 (70%), Gaps = 14/563 (2%) Strand=Plus/Plus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| |||||| || | |||||||| |||||||||||||| ||| |||| Sbjct 183504 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAAT 183563 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCA 48251 || | |||| | | ||| | | ||||| | |||||||||||| | |||| | ||| Sbjct 183564 GTTAAACCGTGTAATTTATTTTGC--TTTTTAAACCAAAATATTGCA-CAAAAGCTTCCA 183620 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 ||| ||||| ||||| || ||| || || ||| || | || | || | Sbjct 183621 CTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA--GAATTTG 183678 Query 48312 TTG--TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | | |||||| |||||| || || || |||| || || |||| | Sbjct 183679 TATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAA 183738 Query 48370 TAGCATTAAAGAGAAAGtttt--tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAG 48427 |||||| ||| | || || | || || ||| |||| ||| |||| ||||| | Sbjct 183739 TAGCATGAAATA--AATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAA 183796 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 |||||| |||| ||||| |||||||||| || || ||||| ||||| | | || Sbjct 183797 ACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGC 183856 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 ||| | || |||||||| | ||||| ||||||||| || |||||||||||| Sbjct 183857 TTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATC 183916 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 |||||| |||||||||||||| |||||||| ||||||| |||||| || | | | ||| Sbjct 183917 ACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT 183976 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | |||| || | ||| |||||| ||||| ||||||||| ||||||||||| || || Sbjct 183977 TTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTC 184036 Query 48668 TGCTTTTTTATACATATTCCATA 48690 ||||||||||| | |||||||| Sbjct 184037 AGCTTTTTTATAAAAATTCCATA 184059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668226898240