Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 497 2e-135 seq2 228 1e-54 >seq9 Length=1049758 Score = 497 bits (550), Expect = 2e-135 Identities = 1034/1523 (68%), Gaps = 29/1523 (2%) Strand=Plus/Plus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| |||| ||||| ||| || || | || ||||| ||||| || Sbjct 572656 ATGAGGATTGACAACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 572715 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | |||||||| ||||| |||||||| | ||||||||| || |||||||| Sbjct 572716 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 572775 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | | | | |||||| | ||||| | || ||||| | ||||| | | ||| Sbjct 572776 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 572835 Query 75886 ATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 ||||||| | | | || ||| ||| ||| | ||| |||||| ||||| |||| Sbjct 572836 ATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGC 572894 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | || || | ||||| ||| || | || | || |||| || | | Sbjct 572895 TTGCTGGACTACCTTGATATGATTCATATGGTCCATTTACTTGTGCTAACTCAACAGACA 572954 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTAAGATCTTGCGCTTCA 76060 ||||| ||| | ||||| || || || || || ||||| |||| |||| |||||| Sbjct 572955 TTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCTATTTAAT-TCTTTAGCTTCA 573013 Query 76061 AGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATA 76120 | ||| | ||||| |||||| ||||||| |||||||| ||| || ||||| || Sbjct 573014 TCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTATT 573073 Query 76121 CCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATA 76180 |||||||| |||||||| ||||| || |||| |||||| ||| ||||||||||| | Sbjct 573074 CCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATTGGGTAATAATTTCTT 573133 Query 76181 TCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 76240 || |||||||||| | |||||| || | |||| | || | || ||| |||| Sbjct 573134 TCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAAAA 573193 Query 76241 TCAAATT-----TTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACAA 76294 | ||||| || ||||||| |||| || | || || || |||||||||||| Sbjct 573194 TTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGATTACAA 573253 Query 76295 ACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTG 76354 || ||||| |||| || | ||||| | || || |||| ||||||||| || Sbjct 573254 ACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAACATAAATTACTACATTTA 573313 Query 76355 ATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAAC 76414 || ||||| | ||||| ||| || || || |||| || ||||| | | | | Sbjct 573314 ATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATATAACATATAT 573373 Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATT 76474 || ||||||||||| || || | |||| ||| | | ||| | | | Sbjct 573374 GGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA--AATCTTG-TGCAAGA 573430 Query 76475 ATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCT 76531 | | ||| | || | || ||| ||| |||| ||||||||| ||||||||| || Sbjct 573431 ACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATATAATTTTTCAAATTCTTCA 573490 Query 76532 CCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCT 76591 |||||| ||| ||||| || |||||||| || ||||| || | ||| | || | Sbjct 573491 CCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCACATTAAAGTCCAGTTTTTATTT 573550 Query 76592 TCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 76651 ||||| || | ||||||||| | |||||||| ||| | |||| ||||| ||| || | | Sbjct 573551 TCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCT 573610 Query 76652 CTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGC 76711 || |||||| || || ||| ||| | | ||||| || || | |||||| || ||| Sbjct 573611 CTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAGTGC 573670 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 |||||||| | ||||| || | | |||| || ||| || || ||||||| |||| Sbjct 573671 CATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGCCACCTTGATCTACATAT 573730 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTT 76831 || || || | |||| ||||||| |||||||||| | || || ||| ||||||| ||| Sbjct 573731 CTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATTAGTT 573790 Query 76832 CCAGAAATAT---AACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 || ||||| || || || | | ||||| | || | ||||| |||||| Sbjct 573791 CCTCTAATATAAGAATTTTGAC---CTCTAATATCTTGTACAGCAACACCTATACCTCCT 573847 Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 || ||||| |||| ||||| | || ||||| ||| | || || ||||| |||| Sbjct 573848 GCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATCGAATCA 573907 Query 76949 TCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 77007 |||| | ||| || ||| || ||||||||| | ||||| | |||||| Sbjct 573908 GATTTCATCGATAATAA-AAAGCATGAAGACATTTGGGGCCTTGGTGTTCCCGAATTAAA 573966 Query 77008 CAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC 77067 ||||| |||| |||||||| || |||||| ||| | || || || ||||| | | | Sbjct 573967 TAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGATAAGTTTCTAAAGC 574026 Query 77068 TGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 ||| | ||| || | ||| ||||||| || || | ||| || | ||| ||||| | Sbjct 574027 CTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGGGC 574085 Query 77127 GTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAA 77186 |||| | | | |||||||| || || ||||| ||| | || || |||||||| |||| Sbjct 574086 GTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTCTCTAATGTTTTAAATCCAA 574145 Query 77187 AATAGTTGTATGAAAAGTCTCTT 77209 |||| | || ||| |||||| Sbjct 574146 AATAATCATAATTAAAATCTCTT 574168 >seq2 Length=1775135 Score = 228 bits (252), Expect = 1e-54 Identities = 405/579 (70%), Gaps = 24/579 (4%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| |||||| || | |||||||| |||||||||||||| ||| |||| Sbjct 183504 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAAT 183563 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCA 46740 || | || | | ||| | ||||||| | ||||||||| || | |||| | ||| Sbjct 183564 GTTAAACCGTGTAATTTATTTT--GCTTTTTAAACCAAAATATTGCA-CAAAAGCTTCCA 183620 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC---TGGCA 46797 ||| ||||| ||||| ||| || || |||| ||| || | || | | | Sbjct 183621 CTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTA 183680 Query 46798 TCATTATGAATCCACCTTTGAGC--CCAATCAGCCTTT-TTCTTTACACAAGGCATTGTT 46854 ||||| ||||| || ||| || || | |||| || |||| || || || Sbjct 183681 TCATTT---ATCCA---TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTT 183734 Query 46855 TCTATAGCATTAAAGAGAAAGttt---ttttCATCACTATCTTTAACATATGTATCTATT 46911 || ||||||| ||| | || || | | | || | ||| |||| ||| |||| ||| Sbjct 183735 TCAATAGCATGAAATA--AATTTAACCTCTCCTTCTC-ATCCTTAATATAATTATCAATT 183791 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 || | |||||| |||| || || || ||||||| ||| || ||||| ||||| | Sbjct 183792 AATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTT 183851 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | |||||| | || ||||||||| | ||||| || |||||| || |||||| Sbjct 183852 TTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATT 183911 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 ||||||||||| ||||||||||| || |||||||| ||||||| |||||||| | | Sbjct 183912 CCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTT 183971 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | ||| | |||| || | ||| |||||| ||||| ||||||||| ||||| ||||| Sbjct 183972 AATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAG 184031 Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 || || ||||||||||| | |||||||| ||| ||||| Sbjct 184032 GCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATAT 184070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933811829120