Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 105 2e-17 >seq9 Length=1049758 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 |||||| |||||||| ||||| || || | ||| ||||| |||||||||| ||| || Sbjct 615629 AGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCC 615688 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 |||||||| | || || || || | | ||| ||||| || |||||||||||| ||| Sbjct 615689 AGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTT 615748 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | | ||||| || || || ||||| || ||||| || || | || Sbjct 615749 AACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGT 615808 Query 152087 CTTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 615809 TTTTACGAAAATTTGCAT 615826 Score = 100 bits (110), Expect = 7e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| ||||| ||||| | ||| ||||| |||||||||| ||| || Sbjct 615858 GTTGATTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 615917 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || ||||| || | | ||| ||||| || |||||||||||| ||| Sbjct 615918 GCAAAAATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTATCTTGAATTTTTGCTTTA 615977 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| | || | | | || || ||| || ||||| || |||||||| || Sbjct 615978 ACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTTTTTCC 616027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| ||||| ||||| | || ||||| |||||||| | ||| || Sbjct 615174 GTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCA 615233 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || ||||| || | | ||| ||||| || ||||||||||| ||| Sbjct 615234 GCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 615293 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | ||||| ||| || || ||||| || ||||| || || | || Sbjct 615294 ACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTT 615353 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 615354 TTTACGAAAATTTGCAT 615370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819824300286