Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq9 107 2e-18 >seq3 Length=1741454 Score = 109 bits (120), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 111092 GTTTA--AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAAC 111149 ||||| ||||||||||| ||||| ||||| || ||||| ||||| || || | || Sbjct 1503881 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 1503822 Query 111150 GGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCC 111209 ||||| ||| | ||| | || ||| |||||| || |||||||| |||| Sbjct 1503821 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 1503762 Query 111210 CGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 111269 | ||||||||||| | |||| || || |||||||| |||||| | |||| | | Sbjct 1503761 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATC 1503702 Query 111270 CGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| || ||||||||||| || ||||||| || Sbjct 1503701 TGACTATAACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 >seq9 Length=1049758 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| || ||||| ||||| || || | || || || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || ||||||||||||||| | ||| | | |||||||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 |||||||||||||| || |||||||||| || Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTT 615159 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| || ||||| ||||| || || | || ||||| Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| || |||||||| | || |||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 615707 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | || | || || |||||||| |||||| | ||| | | || ||||| Sbjct 615706 CAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAAC 615647 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 ||||||||||||||||| |||| ||||| || Sbjct 615646 ATACAAAAAGAATCTACTTTACACTTAGTTTT 615615 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| || || || ||||| || || | || ||||| Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| ||||| || |||||||| |||| |||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111277 ||||| | |||| || || |||||||||||||| | || ||||| | ||||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTAT--CTGATTATA 615421 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111311 | || ||||||||||| || |||||||||| || Sbjct 615420 ACATTCAAAAAGAATCGACCTTACATTTAGTTTT 615387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 111175 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111234 || ||| ||||||| || |||||||| | || ||||| ||||| | |||| | Sbjct 615979 GTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTT 615920 Query 111235 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111294 || || |||||||| |||||| | ||| | | |||||||| |||||||||||||| Sbjct 615919 GCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCA 615860 Query 111295 ACACTACATTTAGTGTT 111311 || |||||||||| || Sbjct 615859 ACCTTACATTTAGTTTT 615843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421810860705616