Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 210 2e-49 >seq2 Length=1775135 Score = 210 bits (232), Expect = 2e-49 Identities = 559/840 (67%), Gaps = 33/840 (4%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||||||| || |||| | |||| || ||||| || || || | Sbjct 183206 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTG 183265 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATAT--ACAGCTTT---A 23319 ||| ||||| ||||| || ||||||||| | || || | | |||| | Sbjct 183266 TAAAGATATTAAGTCCATCCAACTAAATGGATT-----TTTTGAATGGAAAACTTTGGAA 183320 Query 23320 CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 || ||| | ||| | | ||| || |||||||| || |||||| |||| || || Sbjct 183321 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCGATGTATTGAGACAT-AAGTCT 183379 Query 23380 T-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 | | || || || |||| | || | | ||| | | ||| | |||| | Sbjct 183380 TGAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTC 183439 Query 23439 AACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT 23498 ||| || ||||||| ||| | || ||| ||||| | || || ||| | | Sbjct 183440 AACTGCTTCTTTAACTATATTCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCT 183499 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 | | | |||||| |||||| |||| ||||||||||||||||| ||||||||| Sbjct 183500 ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACT 183559 Query 23559 AAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||||| || || ||| || | | ||||||| ||||||||||||| ||| || Sbjct 183560 AAATGTTAAACCGTGTAATTTATTTT-GCTTTTTAAACCAAAATATTGCACAAAAGCTTC 183618 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | ||| || || || || ||| ||| || |||| | | | |||| | || Sbjct 183619 CACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA---AT 183675 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATTGTT 23736 | |||| |||||||| || ||| | | ||| | |||| || || || Sbjct 183676 TTGTATCATTTATCCATTTAGCTGCCCA-TAATGCTTTATTTTTTATTGCTGGTATATTT 183734 Query 23737 TCAATTGCTTTTAAGAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAAT 23792 ||||| || | || | || || | | |||| | ||| | ||||| ||||||| Sbjct 183735 TCAATAGCATGAAATA---AATTTAACCTCTCCTTC-TCATCCTTAATATAATTATCAAT 183790 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 || ||||||||| ||||||| || |||||||||| ||| || ||||| |||||| Sbjct 183791 TAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTT 183850 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAAT 23912 | |||||||| | ||| || || | |||||| | |||| |||||||| || || Sbjct 183851 TTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTAT 183910 Query 23913 ACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CAGT 23969 ||||||||||| ||||| || || | |||| ||||||||||||| |||||| || | Sbjct 183911 TCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT 183970 Query 23970 TGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||| | || || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 183971 ---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 184027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487569772400