Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq10 109 7e-19 seq11 104 3e-17 >seq10 Length=780440 Score = 109 bits (120), Expect = 7e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||||| | || | || || |||||| ||||| || | ||||| || Sbjct 86388 TTTAATATTTGAATTCTACCTTCTTTATTTGGTAATGATATTTCAATATGTAATTCAAAT 86447 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || ||||||||||||||||| |||||||| || ||| || |||||||| || | | Sbjct 86448 CGACCTGGTCTTAATAATGCTTCATCAATTAAATCTATTCTATTTGTCATACCAATTAGT 86507 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 | || || ||||| | ||| || |||||||| || |||||||| || |||| Sbjct 86508 AGTATATTATTTAAGCTATTTACTCCATCTATTTTTGATAATAATTGGTTAACTA 86562 >seq11 Length=775211 Score = 104 bits (114), Expect = 3e-17 Identities = 264/393 (67%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 ||| |||| || |||| || |||||||||||||| ||||| || || | | || || Sbjct 160824 GATCTAGGCCCAATTTATGGATTTCAATGGAGACACTTTGGTGCTGAATATACAGATATG 160765 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTAT-AACGACGTTGA 50595 | | | |||| ||| | |||| || ||||| | |||| ||||| || || | Sbjct 160764 C-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATTTAATTAA 160706 Query 50596 AAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATC 50655 |||| | || | | | |||| ||| | || || |||||| || ||| ||||| Sbjct 160705 AAACGATCCAACATG-TAGGCGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATA 160647 Query 50656 AAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATGTT 50711 ||| | |||||||| |||||| |||||||||||||||||| | || || Sbjct 160646 AAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAA---- 160591 Query 50712 TTATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGT 50770 ||||| ||| ||| |||||| |||| |||| | || | || ||||| || || | Sbjct 160590 TTATCATGTATTATG-TATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCATTTAATAT 160532 Query 50771 AGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGA 50830 ||||| || || |||| || ||| |||| || |||| || | |||| | || Sbjct 160531 TGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGA 160472 Query 50831 ATTTATTCATACGTTAGGAGACGCTCATATTTA 50863 |||||| ||| || ||| | |||||| |||| Sbjct 160471 ATTTATACATGTATTGGGAAATGCTCATGTTTA 160439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667074649662960