Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 156 1e-32 seq3 125 2e-23 >seq9 Length=1049758 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| ||||| ||||| || || ||||| Sbjct 615367 CAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCAGAT 615308 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || |||||||| ||||| || || |||||| Sbjct 615307 ACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAGCAA 615248 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | ||||||||||| || || | ||||||||| | Sbjct 615247 AGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAACATA 615188 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| | ||| | ||||| ||| | ||| Sbjct 615187 CAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGA 615149 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| ||||| ||||| || ||| ||||| Sbjct 615823 CAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCAGAT 615764 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || |||||||| ||||| || || || ||| Sbjct 615763 ACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAA 615704 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||| | |||||||| || || | | || |||||| | Sbjct 615703 AGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAACATA 615644 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || | || | ||||| ||| | ||| Sbjct 615643 CAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGA 615605 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || |||||||| ||||| || || || ||| || || Sbjct 615595 CAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCTGAT 615536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || || || ||||||||||| ||||| || || ||| Sbjct 615535 ACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAACAA 615476 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||||||||| | ||||| || | || || | ||||||||| | Sbjct 615475 AGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAACATT 615416 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || | ||| | ||||| ||||| ||| Sbjct 615415 CAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGA 615377 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| || ||||| || || || || || ||||| || || || ||| || Sbjct 616029 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCAA 615970 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||| || |||||||| |||||||| || |||||| || | || || || ||||||| Sbjct 615969 AAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAAC 615910 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | | ||||||||||| || | | ||||||||| | |||||||||||||| | ||| Sbjct 615909 AATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATT 615850 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||||| ||| | ||| Sbjct 615849 TAGTTTTAAGATTAAGA 615833 >seq3 Length=1741454 Score = 125 bits (138), Expect = 2e-23 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || ||||| | || |||||||| ||||| || || || ||| Sbjct 1503874 AAAATGC---AAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA 1503818 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| ||| || || || ||||||||||| || || Sbjct 1503817 CCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCT 1503758 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||| || | || ||||| |||||||| | |||||||| || ||| | | || Sbjct 1503757 GATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGAC 1503698 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 |||||| | |||||||||||||| Sbjct 1503697 TATAACATTCAAAAAGAATCAAC 1503675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730182094804