Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq11 163 2e-35 >seq11 Length=733468 Score = 163 bits (180), Expect = 2e-35 Identities = 334/489 (68%), Gaps = 8/489 (2%) Strand=Plus/Plus Query 101669 AACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGG 101728 ||||| ||||| | | |||| |||| ||| | ||||||| ||||| ||| Sbjct 125946 AACTGAATTTTTAAACTTTCAACATGATTATTATAAACATGAGCATTTCCTAATACATGT 126005 Query 101729 ATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAG 101788 ||||| || | || || |||| || || || ||||| | || || | ||||||| Sbjct 126006 ATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAAATATAGAATAG 126065 Query 101789 CTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAG 101848 |||||| |||||||| || || | || | |||| |||| |||||||| ||| Sbjct 126066 GAAGCAATATTAAATGGAACACCAAGACCTAAATCACAAGATCGTTGATACATAATACAT 126125 Query 101849 GAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATT 101908 || | ||||||||| | ||||||||||||| ||| | ||||||||| || || ||||| Sbjct 126126 GATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATT 126185 Query 101909 TTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT 101968 | | | ||| |||||||| ||||||| | || | |||| ||| || | || Sbjct 126186 TGATCTAAATCTTTTACATTCCATGCACACAAAATAATTCGTCTACATGTCGGATCATTT 126245 Query 101969 TTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCC 102027 || || || || | | |||||| || ||||| |||| |||||||||| || | Sbjct 126246 TTAATTAAATTGATAATATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATAC 126305 Query 102028 AACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCC-AAG-- 102084 | | || | ||||| || || || || ||||| ||||||||||| | || || ||| Sbjct 126306 -ATATCTGTGTATTCAGCACCAAAGTGTCTCCATTGAAATCCATAGATCGGCCCTAAGTC 126364 Query 102085 ATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGC 102144 || |||| ||| || |||| || | ||||||||||| ||| | ||||| || Sbjct 126365 ATTAACTTC-TCTATGAAATAATTTCCTA--TTATCTAAAAACTCTCTTGTCCCATTAGC 126421 Query 102145 ATCCCAAAT 102153 ||||| || Sbjct 126422 TTCCCATAT 126430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250984265299