Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8 401 7e-107 seq4 172 7e-38 >seq8 Length=956651 Score = 401 bits (444), Expect = 7e-107 Identities = 1005/1507 (67%), Gaps = 35/1507 (2%) Strand=Plus/Minus Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196 ||| ||||| || || |||||| ||| || || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 ||| ||||| | || ||||||||||| |||||||| | |||||| || || |||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 53257 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 53316 ||| | | | | |||||| | || | | || ||||| | ||||| ||||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 53317 ATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 53373 || |||| | ||| | ||||| || || || || Sbjct 457801 ATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGCT 457742 Query 53374 GGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAACT 53430 || | || | ||| ||||| || ||||| || || ||| | |||| |||| || Sbjct 457741 TGCTGGACTA-CCTTGATATGATTCATATGGGCCATTTACTTGT--GCTAATTCA--AC- 457688 Query 53431 CGCC---TCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGTG 53486 || | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| | Sbjct 457687 CGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAG 457629 Query 53487 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 53546 ||||| ||| ||||||| |||| || ||||| | |||||||||||||| || | Sbjct 457628 CTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTC 457569 Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 53606 | || || |||||||||||||| ||||| || ||||||||||| ||| || ||||||| Sbjct 457568 CTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAAT 457509 Query 53607 TAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 | | || |||||||||| | ||||| ||| | ||| | ||| | | ||| Sbjct 457508 TTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTATAATTTTT 457449 Query 53667 GAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||| ||| || | ||||| ||||| | |||||||| || || |||| Sbjct 457448 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGAT 457389 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 ||||||| ||||| |||| || | ||||| || || ||| || | |||||||| Sbjct 457388 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTAC 457329 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 | || || || |||||||||| ||||||| || ||||| ||||| ||||| | | Sbjct 457328 ATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACA 457269 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 | |||| |||||||||||| ||| || || || || ||| | | | || Sbjct 457268 TATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 457209 Query 53901 TTATTATAGATTTGTATCT--CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTC 53958 | | | ||| || || |||||| ||| ||| |||||| ||| |||||| || Sbjct 457208 GAACTGT--TTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATTC 457151 Query 53959 GTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 54017 || |||| || ||| | || || |||||||||| |||||||| || | ||| | | Sbjct 457150 TTCACCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTT 457092 Query 54018 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 54077 | || || || | |||||||| | |||||| | ||| | ||| ||||| ||| | Sbjct 457091 TATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCAC 457032 Query 54078 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 54137 | ||| ||| || || || ||| ||| | | ||| | || | | |||||||| Sbjct 457031 GAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAG 456972 Query 54138 AATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 54197 | ||||| || || | |||| | | | || | ||| || || ||||||| Sbjct 456971 AGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTA 456912 Query 54198 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 54257 ||||| || || | |||| ||||||| |||||||||| | ||||| ||| ||||| Sbjct 456911 CATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCAT 456852 Query 54258 TGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCC 54316 | || || |||| || | | | ||||||| | | | |||||| || Sbjct 456851 TAGTTCCTCTAATATAAGAATTTTGT-CCTCGAATATCTTGTACAGCAACACCTATACCT 456793 Query 54317 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 54376 ||||| ||||| ||| ||||| ||| | ||||| || ||| | || || ||||| | Sbjct 456792 CCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAA 456733 Query 54377 TCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 54435 ||| ||| || ||| || |||||| |||||||||| | | ||||||| ||| Sbjct 456732 TCAGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAATT 456674 Query 54436 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT 54495 |||||| ||||||| ||| || ||||| |||||| ||| | || || ||| || || | Sbjct 456673 AAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCTAA 456614 Query 54496 AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 54554 |||| || ||||| || | ||| ||||||| | || | |||||| | || |||| Sbjct 456613 AGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTGAG 456555 Query 54555 GTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAAC 54614 | | ||||| || || || || || | ||||| || | || || |||||||| | Sbjct 456554 GACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAATC 456495 Query 54615 CAAAATA 54621 ||||||| Sbjct 456494 CAAAATA 456488 >seq4 Length=1653377 Score = 172 bits (190), Expect = 7e-38 Identities = 375/556 (67%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 |||||| ||||| || || || |||||||||||||| || ||| || | || | Sbjct 1529454 AAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1529395 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1529394 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1529335 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || || ||| || | || |||||| || || | |||| ||||| || Sbjct 1529334 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTGATCCATTTA 1529275 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1529274 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1529215 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | || || ||| |||| ||| ||||||| || | |||||| |||| ||||| Sbjct 1529214 AACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGT 1529155 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||||| || |||||||| || || | | || || | || ||||| ||| Sbjct 1529154 ATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCT 1529095 Query 24501 ATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | ||||| | || || |||||||| |||||||| ||||| ||||||||||| || Sbjct 1529094 CTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1529036 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 24618 || |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1529035 TAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1528977 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | |||| ||| | ||||| | ||||||||||| || || || |||||||| | || Sbjct 1528976 CACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAAT 1528917 Query 24679 TCCAGATGTCATGATA 24694 |||| | ||| |||| Sbjct 1528916 TCCATACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721236345520