Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq8 98.7 8e-16 >seq5 Length=1684710 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| || | |||||||| || || ||||| ||||| || ||||| Sbjct 156533 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCA 156592 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | || | || |||||| ||||||||||| | ||| ||| Sbjct 156593 TCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 156652 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | || ||||| || |||||||| |||||| || |||| | | || || Sbjct 156653 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTAT 156712 Query 25212 AATATTCAAAAGGAATCTAC 25231 || |||||||| ||||| || Sbjct 156713 AACATTCAAAAAGAATCAAC 156732 >seq8 Length=956651 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||||| || || ||||| || || || ||||| | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||||| |||||||||||| | || ||||| Sbjct 415345 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 415404 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || |||||||| |||||| | ||| | | ||||| ||| Sbjct 415405 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAAT 415464 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| ||||| || | || | || ||| ||||| ||||||| Sbjct 415465 ATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGG 415511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796554677286