Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11 291 1e-73 seq8 208 1e-48 seq5 185 1e-41 >seq11 Length=733468 Score = 291 bits (322), Expect = 1e-73 Identities = 515/741 (70%), Gaps = 15/741 (2%) Strand=Plus/Plus Query 205348 GGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTA 205407 ||||| | | ||| || ||||||| | | || ||||||| ||| | ||| ||||| Sbjct 125934 GGTGTTCTATTTAACTGAATTTTTAAACTTTCAACATGATTATTATAAACATGAGCATTT 125993 Query 205408 CC-AATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGT 205466 || |||| ||| ||||||||| ||||| ||||||| || ||||| |||||||| || Sbjct 125994 CCTAATAC-ATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGT 126052 Query 205467 CAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTG 205526 |||| | ||| ||||| ||||||||| ||||| | ||| | |||| |||| ||| Sbjct 126053 AAATATAGAATAGGAAGCAATATTAAATGGAACACCAAGACCTAAATCACAAGATCGTTG 126112 Query 205527 ATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGAC 205585 |||||| ||||| | |||| || || |||| |||||| ||| || | ||||| Sbjct 126113 ATACATAATACATGATA---ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGAC 126168 Query 205586 AAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC 205645 |||| |||| |||| | || | |||| | |||||| || || || || || Sbjct 126169 AAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACACAAAATAATTCGTC 126228 Query 205646 TAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGAT 205705 || || || | |||||| ||| ||| ||||||| | |||| ||||||| |||| || Sbjct 126229 TACATGTCGGATCATTTTTAATTAAATTGATAATATTTTTTAACTGATCAACACCTTTAT 126288 Query 205706 TTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCAT 205765 | |||||| | || |||||| | |||| ||||||||| || | ||||||||| |||| Sbjct 126289 CTTTATAATCAGCATACATATCTGTGTATTCAGCACCAAAGTGTCTCCATTGAAATCCAT 126348 Query 205766 AAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatatttta 205825 | | || ||||| ||| ||| ||||| | || | || | || | | | | Sbjct 126349 AGATCGGCCCTAAGTCATTAACTTCTCTATGAAATAATTTCCTATTATCTAAAAACTCTC 126408 Query 205826 atgatccattttcatcccaaatatggattcctttattttttaGAAT--ATTTGTATTAGT 205883 || ||||| | ||||| ||| | | ||| ||| | | ||| |||| ||| || Sbjct 126409 TTGTCCCATTAGCTTCCCA--TATTCTTACATTTTTTTCTAATAATGTATTTCCATTTGT 126466 Query 205884 TGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGT 205943 | ||| ||||||||||||||| ||||||| || ||||| ||| | | |||||| Sbjct 126467 TTCTCCCCTTATAAACCATAATAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGT 126526 Query 205944 TGTAAATAATGGAAATGAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTT 206003 ||| |||||||| || | ||| ||| ||| ||||||| | | ||| || | || Sbjct 126527 TGTTAATAATGGGAAATATTCACTTAAATTAAATTTCATCATATATCCAAATTTACTTAA 126586 Query 206004 TGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATA 206061 | | | ||||||||||||| | ||| |||| |||||| || ||| || ||||| Sbjct 126587 TACACCAACACCTGTTCTATCATCTTGTTTAT--TTCCATGCATTATTATATCATATATA 126644 Query 206062 CCTTTTAAATATTGATATTCA 206082 |||||||||||||||||| Sbjct 126645 ATATTTAAATATTGATATTCA 126665 >seq8 Length=956651 Score = 208 bits (230), Expect = 1e-48 Identities = 185/229 (81%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| ||||||| ||||| || ||| | || | ||| || | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 415345 GATACTATTGAAAATGTTAAAGCA-AAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 415403 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | |||||||| |||||||||||||| ||| | |||||||| |||||||| Sbjct 415404 GCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAA 415463 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| |||||||||||||| || ||||| |||||| | ||| |||| ||| Sbjct 415464 TATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGT 415512 Score = 141 bits (156), Expect = 1e-28 Identities = 133/167 (80%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAG 124622 |||| ||||| || ||| | || | ||| || |||||| ||| ||| ||||| || Sbjct 414684 CAGGAAAAACAATCACTCTTGATGTCGAACCATCTGATACTATTGAAAATGTTAAAGCA- 414742 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||| Sbjct 414743 AAAATTCAAGATAAAGAAGGTATTCCACCTGATCAGCAAAGATTAATTTTTGCTGGAAAA 414802 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729 |||||||| ||| | |||||||| || ||||| || |||||||| Sbjct 414803 CAATTAGAAGATGGCAGAACATTATCTGACTATAACATACAAAAAGA 414849 >seq5 Length=1684710 Score = 185 bits (204), Expect = 1e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 156535 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATC 156594 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| ||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 156595 AGATACAATTGAAAATGTTAAAGCA-AAAATCCAAGATAAAGAAGGAATTCCCCCTGATC 156653 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | |||||||| |||||||||||||| ||| | |||| ||| || |||| Sbjct 156654 AACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATA 156713 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||||||||||||||| || |||||||| Sbjct 156714 ACATTCAAAAAGAATCAACCTTACATTTGGT 156744 Score = 129 bits (142), Expect = 9e-25 Identities = 303/457 (66%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 202739 TATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATAT 202798 |||||| | ||| |||||| | ||||| |||||| |||| | | |||| ||||||| Sbjct 1182746 TATTTTGTCATATATAAATTTATGTCAAAATTACGTTTACAACTATTATAATCCATATAT 1182687 Query 202799 CTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGAC 202858 | |||||| ||||| | ||| || ||||| | |||||||| ||| ||| || Sbjct 1182686 CGAATTTTTCCAAAAACACTTCTCTCATTCCAACTTTGATCATGAACACCCATAATAGAT 1182627 Query 202859 CACATACATCCAA-CATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 |||| || || ||||| |||| | |||||| ||| || ||| || | |||| Sbjct 1182626 GACATG-ATGGAAGCATATGCATTAGCTGTTTTTCCATCAATAGAAAATTCATTAGTTAA 1182568 Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977 | |||||| ||| | || || ||| | | |||||||| || Sbjct 1182567 TTTAATTGCACATTTTAATGCTGCTTTAGAATTTTCTGACCAGTTCAGAATTTTTTTGGC 1182508 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 |||||||||||||||| || | || ||| |||| | | | | |||| ||| | Sbjct 1182507 CCAATACATTCTTAAAAATTCGTGAATTGTACCTTCATTTACTAATTGTAATTGGCAACA 1182448 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGAT-ATAAACTATATATATGTT 203096 |||||| | || | ||| || |||||| || | | |||| | ||||| ||| | Sbjct 1182447 ATTCCAAATATCATTATGTGTCCTAGCATTTCGAAAATCTTCATAATC-ATATAAATGGT 1182389 Query 203097 TTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTA 203156 | || | || || ||||| |||| ||| ||||||||| ||||| ||||| | Sbjct 1182388 TCCTTTTGTCTAATTCATGTTTTTTTAAACTTTCCTTTGCCCAATCCTTAGCTCCATTAA 1182329 Query 203157 TATTATCGTAATTTTCATTATAATAACAAAAATTATC 203193 |||||| || || | |||||| ||||||||||| || Sbjct 1182328 AATTATCATAGTTCTTATTATAGTAACAAAAATTGTC 1182292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455537283200