Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8 170 3e-37 seq5 154 2e-32 >seq8 Length=956651 Score = 170 bits (188), Expect = 3e-37 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || |||||||| || |||||||| |||||||||||| || Sbjct 415511 CCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGAT 415452 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| ||||||||||||||||||||||| |||||||||||||| || || Sbjct 415451 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 415392 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| || ||| || Sbjct 415391 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGACA 415332 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||||||||| |||||||||||||| | ||| |||||||| Sbjct 415331 TCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 114 bits (126), Expect = 2e-20 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 146087 TCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAA 146146 ||||| ||| ||||| || || | ||||||| ||| ||||||||||||||||||||| Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 146147 ATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || |||||||||||||| || ||||| |||||||||||||| Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTG 414749 >seq5 Length=1684710 Score = 154 bits (170), Expect = 2e-32 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || |||||||| || ||||| || || | |||||||| ||| Sbjct 156748 TATTACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATC 156689 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct 156688 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 156629 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| |||||||| ||| || || || || ||||| Sbjct 156628 TTGGATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGT 156569 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||| || ||||||||||| | || ||||||||||| Sbjct 156568 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 156533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525944590080